Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 1.1e-184 649.8 336 100.0
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 4.0e-105 385.6 341 61.3
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 5.2e-105 385.2 341 64.5
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 7.5e-104 381.3 344 60.8
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 1.8e-102 376.7 348 59.8
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 1.6e-101 373.6 286 67.5
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 8.6e-100 367.9 345 59.4
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 1.1e-99 367.5 345 62.3
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.1e-99 367.5 303 63.7
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 1.2e-98 364.0 341 61.6
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 1.2e-98 364.0 340 61.5
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 6.1e-98 361.7 340 60.9
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 8.0e-98 361.3 340 59.4
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 1.0e-97 360.9 345 58.8
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 8.9e-97 357.8 324 60.8
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 1.2e-96 357.5 305 62.3
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 5.8e-96 355.1 302 62.3
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 5.8e-96 355.1 289 65.7
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 1.3e-95 354.0 348 58.0
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 1.3e-95 354.0 335 57.3
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 2.2e-95 353.2 289 65.7
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.2e-95 353.2 338 58.0
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 8.3e-95 351.3 322 60.6
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 2.4e-94 349.7 294 61.9
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 2.4e-94 349.7 354 57.1
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 2.4e-94 349.7 335 56.4
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 7.0e-94 348.2 338 56.8
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 9.2e-94 347.8 326 63.5
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 3.5e-93 345.9 333 57.1
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 4.6e-93 345.5 317 59.6
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 7.8e-93 344.7 300 60.0
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.3e-92 344.0 328 57.9
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 5.0e-92 342.0 345 57.4
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 8.6e-92 341.3 335 58.5
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 1.6e-90 337.0 343 57.7
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 1.1e-89 334.3 300 60.0
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 5.2e-89 332.0 335 56.4
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 6.8e-89 331.6 313 58.1
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 8.9e-89 331.3 306 58.2
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 2.0e-88 330.1 292 61.0
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 4.4e-88 328.9 326 58.3
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 1.7e-87 327.0 338 53.8
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 2.9e-87 326.2 284 61.3
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 2.9e-87 326.2 319 57.4
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 3.7e-87 325.9 342 55.6
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 4.9e-87 325.5 324 58.6
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 6.4e-87 325.1 320 56.9
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 6.4e-87 325.1 288 60.1
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 6.4e-87 325.1 322 58.1
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 8.3e-87 324.7 305 59.0
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 8.3e-87 324.7 305 59.0
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 1.9e-86 323.6 323 57.0
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 2.4e-86 323.2 288 60.4
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 2.4e-86 323.2 338 55.6
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 3.2e-86 322.8 298 58.4
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 4.1e-86 322.4 288 59.7
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 4.1e-86 322.4 320 55.9
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 4.1e-86 322.4 338 54.4
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 4.1e-86 322.4 338 54.4
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 5.4e-86 322.0 311 57.6
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 5.4e-86 322.0 300 58.0
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 9.2e-86 321.2 324 57.7
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 9.2e-86 321.2 338 54.1
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 9.2e-86 321.2 318 55.7
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 2.7e-85 319.7 287 61.7
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 2.7e-85 319.7 341 54.8
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 3.5e-85 319.3 340 55.6
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 4.6e-85 318.9 288 56.9
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 4.6e-85 318.9 292 60.3
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 1.0e-84 317.8 341 54.5
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 4.3e-83 312.4 301 57.1
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 4.3e-83 312.4 332 53.3
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 7.3e-83 311.6 359 50.1
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 1.2e-82 310.8 323 54.5
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 1.2e-82 310.8 381 50.1
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 2.1e-82 310.1 344 53.5
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 2.8e-82 309.7 323 54.8
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 8.1e-82 308.1 292 57.2
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.8e-81 307.0 335 54.0
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 1.4e-78 297.4 302 56.0
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 5.4e-78 295.4 324 55.6
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 4.6e-77 292.4 340 49.4
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 1.3e-76 290.8 338 48.8
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 6.6e-76 288.5 339 49.6
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 2.2e-71 273.5 281 51.6
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 4.9e-71 272.3 321 49.8
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 2.1e-69 266.9 341 51.0
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 6.0e-61 238.8 326 46.9
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 7.8e-61 238.4 322 42.9
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 2.5e-59 233.4 240 48.8
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 1.9e-54 217.2 217 54.4
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 1.9e-54 217.2 296 43.9
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 6.7e-52 208.8 199 53.3
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 4.3e-51 206.1 275 47.3
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 1.2e-32 144.8 291 35.4
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 2.7e-29 133.7 96 63.5
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 1.8e-28 131.0 140 55.0
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.0e-27 127.5 123 60.2
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 3.7e-26 123.2 293 27.6
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 5.5e-22 109.4 97 55.7
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 2.7e-21 107.1 89 58.4
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-20 104.0 298 26.2
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 3.9e-20 103.2 126 50.8
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 1.0e-15 88.6 133 44.4
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.6e-13 81.3 63 63.5
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 3.0e-12 77.0 75 46.7


User provided reference genes

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