Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 0.0e+00 1174.1 599 100.0
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 1.8e-294 1015.4 598 85.6
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 7.2e-283 976.9 600 82.2
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.7e-282 974.2 600 82.5
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.8e-279 964.9 602 81.1
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 3.1e-278 961.4 600 81.5
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.2e-277 959.5 600 81.0
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.6e-277 958.4 608 80.6
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.5e-277 958.0 603 80.6
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 7.7e-277 956.8 589 82.5
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 1.7e-276 955.7 603 80.1
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.2e-276 955.3 591 81.2
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 5.0e-276 954.1 616 79.2
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.1e-275 953.0 602 79.9
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.2e-275 951.4 599 81.0
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 4.2e-275 951.0 600 80.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 4.2e-275 951.0 601 80.0
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 5.5e-275 950.7 600 80.7
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 9.4e-275 949.9 624 78.5
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 9.4e-275 949.9 600 80.3
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 3.6e-274 948.0 592 80.9
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 6.1e-274 947.2 601 79.5
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 3.0e-273 944.9 600 79.0
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.0e-272 942.2 600 79.0
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 7.5e-272 940.3 599 80.3
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.2e-271 938.7 601 78.7
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 3.7e-271 937.9 547 86.7
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 8.3e-271 936.8 593 79.3
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.1e-270 936.4 601 78.5
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.1e-270 936.4 599 78.8
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 4.1e-270 934.5 596 79.4
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.6e-269 932.6 596 79.5
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 7.7e-269 930.2 600 78.8
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 1.3e-268 929.5 602 77.2
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.3e-268 929.5 596 78.9
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 1.3e-268 929.5 604 77.2
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.7e-268 929.1 602 77.6
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 8.5e-268 926.8 619 77.7
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.5e-267 926.0 604 77.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 1.5e-267 926.0 601 78.2
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 2.5e-267 925.2 604 76.7
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 3.2e-267 924.9 604 77.2
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 4.2e-267 924.5 600 77.2
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 5.5e-267 924.1 604 76.7
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 7.2e-267 923.7 601 77.5
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 7.2e-267 923.7 604 77.3
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 9.4e-267 923.3 603 77.8
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.6e-266 922.5 604 76.8
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 1.6e-266 922.5 600 77.0
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.7e-266 921.8 596 78.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 3.6e-266 921.4 600 77.7
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 6.1e-266 920.6 567 81.7
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.8e-265 919.1 600 76.5
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.8e-265 919.1 604 77.8
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.3e-265 918.7 600 77.0
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 2.3e-265 918.7 597 76.7
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 2.3e-265 918.7 597 78.7
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.3e-265 918.7 603 77.6
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 4.0e-265 917.9 598 77.1
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 4.0e-265 917.9 600 76.3
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 5.2e-265 917.5 604 76.3
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 1.5e-264 916.0 598 76.6
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 2.0e-264 915.6 596 77.2
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.4e-264 914.8 600 76.3
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.4e-264 914.8 600 76.3
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.4e-264 914.8 600 76.3
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 4.4e-264 914.4 603 77.1
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.7e-264 914.1 601 76.7
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 7.5e-264 913.7 603 77.3
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 9.8e-264 913.3 590 77.6
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 9.8e-264 913.3 648 72.5
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.3e-263 912.9 604 76.7
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 2.2e-263 912.1 603 76.9
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 8.3e-263 910.2 604 76.5
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.4e-262 909.4 600 76.5
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.4e-262 909.4 615 75.6
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.8e-262 909.1 593 79.4
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.1e-262 908.3 593 79.1
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 9.1e-262 906.7 601 76.4
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.6e-261 906.0 598 75.9
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 4.5e-261 904.4 599 76.5
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 4.5e-261 904.4 598 77.1
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.7e-260 902.5 595 76.6
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.9e-260 901.7 586 77.5
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 5.0e-260 901.0 598 76.3
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 5.0e-260 901.0 598 76.1
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 9.5e-259 896.7 657 71.1
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 2.1e-258 895.6 620 73.2
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 4.7e-258 894.4 605 75.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 8.0e-258 893.6 595 75.3
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.5e-256 889.4 681 69.0
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 3.7e-255 884.8 596 75.3
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.8e-254 882.5 624 73.1
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.4e-254 882.1 595 75.1
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 9.2e-254 880.2 600 73.8
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.2e-253 879.8 570 79.1
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.2e-253 879.8 600 73.8
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.7e-252 875.9 562 78.5
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 8.6e-252 873.6 596 73.8
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.0e-250 867.1 600 74.8
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.5e-248 860.5 568 77.3
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.9e-247 857.8 551 77.9
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 3.2e-246 855.1 600 71.2
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.7e-244 849.4 550 77.1
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 3.6e-242 841.6 597 72.9
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 3.1e-233 812.0 612 68.8
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 4.4e-232 808.1 642 66.0
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.1e-230 803.5 600 69.0
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.6e-226 788.5 502 78.9
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 6.8e-225 784.3 655 62.1
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 3.5e-221 771.9 496 78.8
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.3e-220 769.2 602 67.1
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 3.3e-219 765.4 602 65.0
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.6e-219 764.6 548 73.7
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.1e-218 762.7 478 81.0
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 6.2e-218 761.1 597 65.2
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 9.0e-217 757.3 476 79.6
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 3.7e-194 682.2 427 79.6
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.1e-189 666.4 503 69.6
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 5.5e-182 641.7 440 73.4
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.6e-176 622.9 602 54.3
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 2.1e-173 613.2 600 53.8
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 7.4e-171 604.7 595 53.3
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.0e-163 580.1 438 66.4
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.9e-159 566.2 334 86.2
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 9.4e-150 534.6 366 74.6
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 1.6e-141 507.3 620 46.8
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 2.2e-138 496.9 418 62.0
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 2.1e-133 480.3 577 44.5
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.6e-127 458.8 316 74.1
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.1e-126 458.0 532 51.9
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 7.3e-126 455.3 288 80.2
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.8e-115 419.1 248 82.7
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 4.3e-110 402.9 437 51.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.4e-108 397.1 280 72.5
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 6.2e-101 372.5 315 62.2
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.4e-92 344.7 273 67.0
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.9e-78 297.7 662 32.6
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.0e-71 273.9 181 77.3
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 1.5e-70 271.6 554 34.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 7.4e-62 242.7 153 77.8
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-59 235.3 153 75.2
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 3.2e-57 227.3 145 75.9
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 4.1e-44 183.7 613 27.6
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.0e-44 183.0 149 66.4
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 4.5e-43 180.3 120 77.5
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.0e-31 142.5 96 70.8
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.3e-31 141.4 120 55.8
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 2.6e-30 137.9 97 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 9.8e-30 136.0 186 40.9
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.5e-27 127.1 97 61.9
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 9.5e-25 119.4 71 78.9
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.4e-22 110.5 66 77.3
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.1e-20 105.9 69 65.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 9.2e-20 102.8 78 62.8
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 6.6e-18 96.7 627 23.3
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 7.3e-17 93.2 51 90.2
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.1e-16 91.7 51 88.2
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 1.5e-14 85.5 71 56.3
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.0e-14 85.1 94 53.2
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 2.6e-14 84.7 199 32.2
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 3.4e-14 84.3 49 83.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.7e-13 82.0 48 83.3
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 3.9e-10 70.9 61 63.9
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 2.0e-06 58.5 29 89.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 4.4e-06 57.4 54 55.6


User provided reference genes

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