Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 0.0e+00 1293.5 908 100.0
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 4.5e-252 875.2 894 73.8
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 1.6e-249 866.7 886 74.7
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 6.7e-248 861.3 883 75.0
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 4.3e-247 858.6 884 75.3
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 4.5e-244 848.6 891 73.3
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 6.5e-243 844.7 884 76.0
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 4.2e-242 842.0 884 76.2
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 5.5e-242 841.6 884 74.7
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 7.2e-242 841.3 899 71.7
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 9.3e-242 840.9 884 74.5
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 2.7e-241 839.3 883 64.3
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 7.9e-241 837.8 884 73.8
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 1.3e-240 837.0 884 74.2
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 1.3e-240 837.0 923 60.7
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.0e-240 835.9 884 74.2
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 1.5e-239 833.6 883 73.8
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 4.3e-239 832.0 884 73.5
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 7.4e-239 831.2 884 74.4
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 9.7e-239 830.9 884 74.1
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 1.1e-237 827.4 887 74.2
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.1e-237 827.4 885 74.0
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 9.0e-237 824.3 883 63.4
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 7.2e-234 814.7 889 72.3
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.2e-233 813.9 889 70.5
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.2e-233 813.9 885 72.2
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 6.1e-233 811.6 894 71.0
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.0e-232 810.8 884 71.4
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 2.5e-231 806.2 884 73.4
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 2.8e-230 802.7 885 72.2
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.9e-229 798.1 887 72.6
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 9.1e-229 797.7 886 71.7
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 2.0e-228 796.6 897 72.6
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 3.8e-227 792.3 884 72.5
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 1.1e-226 790.8 887 64.6
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 1.4e-226 790.4 886 73.4
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.2e-226 789.3 886 71.8
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 4.2e-226 788.9 894 73.4
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 2.1e-225 786.6 886 71.3
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 3.6e-225 785.8 895 73.4
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 4.7e-225 785.4 884 72.4
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 4.7e-225 785.4 895 73.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 4.7e-225 785.4 895 69.3
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 1.0e-224 784.3 884 70.9
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.0e-224 784.3 884 70.4
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 4.4e-223 778.9 886 71.0
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 7.4e-223 778.1 895 72.1
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 9.7e-223 777.7 884 71.9
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 2.8e-222 776.2 889 70.9
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.4e-221 773.9 895 71.5
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 3.5e-220 769.2 896 70.8
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 4.5e-220 768.8 909 59.2
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 1.7e-219 766.9 887 63.8
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 2.5e-218 763.1 892 70.1
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 3.2e-218 762.7 895 70.5
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 4.2e-218 762.3 885 71.2
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 4.2e-218 762.3 883 71.3
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 7.2e-218 761.5 885 70.1
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 2.1e-217 760.0 895 71.7
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 2.7e-217 759.6 887 70.6
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 6.1e-217 758.4 894 71.8
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 8.0e-217 758.1 894 70.0
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 3.0e-216 756.1 885 70.8
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 6.7e-216 755.0 884 70.2
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.5e-215 753.8 886 69.6
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 1.5e-215 753.8 885 70.6
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 4.4e-215 752.3 884 70.8
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 5.7e-215 751.9 884 66.4
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.7e-215 751.9 886 69.8
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 5.7e-215 751.9 887 70.0
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.8e-214 749.6 886 69.4
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 8.2e-214 748.0 884 67.2
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.1e-213 747.7 886 69.5
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.6e-212 743.8 886 69.3
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 4.5e-212 742.3 884 68.2
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 4.5e-212 742.3 884 69.6
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.7e-211 740.3 885 66.6
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 2.5e-210 736.5 885 66.0
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 1.2e-209 734.2 912 48.4
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 4.7e-209 732.3 890 58.2
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 4.7e-209 732.3 879 71.1
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.5e-207 727.2 885 69.6
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 2.2e-203 713.4 892 68.5
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 2.2e-203 713.4 884 67.2
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 8.5e-203 711.4 884 66.9
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 9.4e-202 708.0 671 71.4
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 3.6e-201 706.1 806 73.8
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 6.8e-200 701.8 883 67.4
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 8.8e-200 701.4 883 67.5
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 3.4e-199 699.5 883 67.4
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 9.8e-199 698.0 883 68.0
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.3e-198 695.3 888 68.5
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 5.4e-197 692.2 884 67.8
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 1.0e-195 688.0 885 67.3
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 2.3e-195 686.8 895 64.5
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 1.4e-192 677.6 889 67.2
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 2.0e-191 673.7 888 66.7
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 1.5e-186 657.5 951 58.5
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 1.0e-184 651.4 894 62.4
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 6.0e-180 635.6 887 61.6
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 1.3e-174 617.8 805 68.1
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 3.0e-171 606.7 897 61.4
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 9.5e-170 601.7 815 66.0
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 3.0e-155 553.5 879 59.2
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 1.6e-153 547.7 896 58.5
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 6.4e-150 535.8 890 49.6
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 2.3e-147 527.3 902 56.1
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 2.3e-147 527.3 902 56.1
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.1e-144 518.5 645 60.6
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 4.5e-143 513.1 919 57.2
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 6.0e-140 502.7 885 56.7
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.9e-109 401.4 589 43.1
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 1.8e-99 368.2 921 48.2
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 3.2e-93 347.4 318 61.9
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 6.8e-91 339.7 605 40.0
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.2e-90 339.0 519 57.8
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 1.7e-86 325.1 940 42.8
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 3.2e-72 277.7 676 45.7
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.1e-51 208.0 183 60.1
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.1e-47 195.3 138 70.3
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.6e-42 178.3 134 66.4
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.7e-41 175.6 138 62.3
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.8e-33 147.9 171 49.7
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 7.9e-31 140.2 148 53.4
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 6.9e-27 127.1 79 79.7
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 2.4e-24 118.6 91 63.7
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 4.6e-23 114.4 84 67.9
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 1.1e-21 109.8 77 72.7
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 3.3e-21 108.2 79 69.6
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.1e-19 103.2 82 58.5
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 2.6e-18 98.6 91 58.2
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 7.9e-15 87.0 65 63.1
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 1.0e-14 86.7 64 67.2
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.9e-14 84.7 123 48.0
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.8e-12 78.6 79 54.4
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.8e-12 78.6 64 59.4
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.4e-11 76.3 62 62.9
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 4.1e-11 74.7 80 50.0
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 2.7e-07 62.0 60 55.0
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 5.1e-06 57.8 92 39.1


User provided reference genes

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