Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.2e-24 114.8 56 100.0
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 3.9e-21 104.0 56 91.1
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 5.0e-21 103.6 56 92.9
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 2.5e-20 101.3 56 89.3
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.5e-20 99.4 56 89.3
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.5e-20 99.4 56 89.3
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 9.5e-20 99.4 56 89.3
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 9.5e-20 99.4 56 89.3
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 2.1e-19 98.2 56 85.7
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 6.1e-19 96.7 54 85.2
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 1.8e-18 95.1 52 88.5
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.8e-18 95.1 56 87.5
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 8.9e-18 92.8 56 76.8
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 2.6e-17 91.3 56 75.0
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 9.8e-17 89.4 53 71.7
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 9.8e-17 89.4 50 80.0
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.3e-16 89.0 53 69.8
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.3e-16 89.0 56 71.4
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 1.3e-16 89.0 54 72.2
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 2.9e-16 87.8 50 78.0
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 2.9e-16 87.8 54 72.2
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 2.9e-16 87.8 50 76.0
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 2.9e-16 87.8 50 76.0
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.7e-16 87.4 50 76.0
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 3.7e-16 87.4 50 76.0
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 3.7e-16 87.4 57 68.4
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 3.7e-16 87.4 50 76.0
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 4.9e-16 87.0 54 70.4
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 4.9e-16 87.0 54 70.4
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 4.9e-16 87.0 50 74.0
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 4.9e-16 87.0 52 69.2
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 8.3e-16 86.3 55 63.6
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 8.3e-16 86.3 52 69.2
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 8.3e-16 86.3 52 69.2
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 8.3e-16 86.3 54 66.7
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 1.1e-15 85.9 50 74.0
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 1.4e-15 85.5 50 72.0
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.4e-15 85.5 52 69.2
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 1.4e-15 85.5 52 69.2
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 1.4e-15 85.5 52 69.2
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 1.9e-15 85.1 56 78.6
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.4e-15 84.7 54 64.8
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 2.4e-15 84.7 54 64.8
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 2.4e-15 84.7 50 72.0
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 2.4e-15 84.7 50 72.0
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.4e-15 84.7 49 77.6
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.4e-15 84.7 49 77.6
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 2.4e-15 84.7 49 77.6
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 5.4e-15 83.6 50 72.0
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.4e-15 83.6 48 75.0
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.4e-15 83.6 48 75.0
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 7.0e-15 83.2 54 64.8
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 7.0e-15 83.2 49 75.5
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 7.0e-15 83.2 49 75.5
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 7.0e-15 83.2 49 75.5
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 9.2e-15 82.8 49 75.5
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 4.6e-14 80.5 52 71.2
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 7.8e-14 79.7 49 71.4
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 2.3e-13 78.2 50 62.0
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 5.0e-13 77.0 40 90.0
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 8.6e-13 76.3 53 69.8
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.1e-12 75.9 48 68.8
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 3.3e-12 74.3 55 67.3
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-12 74.3 55 67.3
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 1.6e-11 72.0 47 63.8
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 2.8e-11 71.2 52 59.6
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 2.8e-11 71.2 52 59.6
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 2.8e-11 71.2 52 59.6
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 2.8e-11 71.2 52 59.6
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 2.8e-11 71.2 52 59.6
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 2.8e-11 71.2 52 59.6
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 2.8e-11 71.2 51 60.8
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 2.8e-11 71.2 52 59.6
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 3.6e-11 70.9 52 57.7
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 3.6e-11 70.9 52 57.7
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 3.6e-11 70.9 52 57.7
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 3.6e-11 70.9 56 60.7
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 3.6e-11 70.9 51 62.7
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 4.7e-11 70.5 52 55.8
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 4.7e-11 70.5 52 55.8
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 4.7e-11 70.5 52 55.8
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 8.0e-11 69.7 44 70.5
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 8.0e-11 69.7 44 70.5
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 1.1e-10 69.3 37 89.2
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 1.1e-10 69.3 45 77.8
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.1e-10 69.3 53 56.6
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 1.4e-10 68.9 49 65.3
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 4.0e-10 67.4 45 75.6
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.2e-09 65.9 35 85.7
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.2e-09 65.9 35 85.7
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.2e-09 65.9 35 85.7
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 4.4e-09 63.9 58 65.5
MELO3C027952.2 Cucumis melo HOM05D002824 ORTHO05D008771 4.4e-09 63.9 58 65.5
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 4.4e-09 63.9 48 70.8
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 4.4e-09 63.9 48 70.8
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 4.4e-09 63.9 48 70.8
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 4.4e-09 63.9 48 70.8
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 4.4e-09 63.9 48 70.8
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 7.5e-09 63.2 40 77.5
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 1.7e-08 62.0 42 71.4
COL.COLO4_02277 Corchorus olitorius HOM05D002824 ORTHO05D008771 2.2e-08 61.6 43 79.1
MELO3C030417.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.9e-08 61.2 58 63.8
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.7e-08 60.8 58 60.3
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 8.3e-08 59.7 40 77.5
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.3e-08 59.7 41 70.7
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.1e-07 59.3 44 70.5
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.4e-07 58.9 58 62.1
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.2e-06 55.8 55 50.9
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.2e-06 55.8 55 50.9
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 1.2e-06 55.8 48 58.3
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 2.7e-06 54.7 47 42.6
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 3.5e-06 54.3 31 74.2
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.5e-06 54.3 31 74.2
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.5e-06 54.3 31 74.2
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 3.5e-06 54.3 31 74.2
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 4.6e-06 53.9 30 83.3
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 7.8e-06 53.1 45 46.7


User provided reference genes

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