Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 2654.0 1328 100.0
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1900.2 1333 71.8
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1879.8 1328 70.6
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1859.7 1328 69.9
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1778.8 1274 70.1
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1732.2 1329 65.6
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1724.1 1328 64.8
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1722.2 1332 64.8
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1718.4 1190 71.3
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1708.0 1330 64.5
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1702.2 1333 64.7
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1685.2 1330 64.2
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1683.3 1329 64.3
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1679.1 1332 64.0
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1676.8 1330 63.7
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1675.6 1331 63.4
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1674.4 1333 63.5
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1674.1 1335 63.0
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1671.8 1331 64.3
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1661.7 1333 63.1
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1648.6 1333 63.1
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1648.6 1333 62.0
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1645.6 1329 62.7
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1644.4 1330 62.6
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1638.2 1328 61.6
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1634.4 1330 62.6
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1625.1 1277 64.1
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1624.8 1338 61.4
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1618.6 1333 61.7
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1617.8 1326 62.1
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1611.7 1331 61.8
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1608.6 1330 61.7
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1608.6 1333 61.3
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1607.4 1333 61.2
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1607.4 1333 61.1
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1606.7 1333 61.7
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1606.3 1248 64.8
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1606.3 1332 60.9
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1605.1 1326 62.0
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1603.6 1333 61.0
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1603.6 1339 61.5
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1599.7 1333 61.1
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1591.2 1326 61.5
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1590.5 1254 64.4
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1588.2 1332 61.3
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1580.8 1327 60.4
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1580.1 1326 61.2
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1580.1 1331 61.6
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1580.1 1340 60.5
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1579.3 1327 60.7
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1575.1 1330 60.3
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1574.7 1329 60.7
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1574.3 1326 60.9
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1573.1 1327 59.3
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1570.1 1351 60.0
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1567.4 1332 60.3
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1564.7 1330 60.6
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1560.8 1324 60.9
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1554.7 1331 59.1
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1550.0 1331 59.1
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1540.4 1331 59.7
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1540.0 1267 61.6
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1533.1 1251 61.4
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1531.9 1344 59.5
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1521.9 1246 61.9
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1520.0 1328 58.9
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1493.0 1333 58.5
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1480.7 1331 58.2
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1479.9 1336 56.8
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1476.1 1332 57.2
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1471.4 1325 57.8
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1470.7 1336 57.0
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1460.3 1280 60.0
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1459.1 1336 56.1
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1455.3 1332 56.8
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1453.7 1335 56.3
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1453.0 1336 56.3
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1442.9 1335 55.6
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1442.2 1337 55.9
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1441.4 1335 55.5
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1437.6 1336 56.1
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1436.0 1100 65.5
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1429.8 1101 65.5
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1427.2 1374 54.0
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1391.7 1342 53.7
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1371.3 1137 61.4
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1358.2 1333 53.6
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1350.5 1118 60.4
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1347.0 1097 61.3
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1343.9 1563 48.2
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1339.7 1346 51.1
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1305.4 1327 52.4
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1296.6 1173 57.4
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1293.5 1353 50.8
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1270.4 1329 52.9
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1176.0 951 62.4
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1129.4 1329 49.2
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1107.8 866 64.1
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1100.9 1257 47.3
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 2.7e-311 1072.4 907 60.5
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 8.2e-295 1017.7 757 67.0
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 8.0e-250 868.2 1367 38.8
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 1.5e-232 810.8 1155 40.5
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 8.6e-228 795.0 857 48.7
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 2.9e-223 780.0 1193 40.1
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.9e-222 777.3 1305 37.5
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 2.4e-214 750.4 811 50.9
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 2.3e-156 557.8 1617 28.9
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 1.6e-133 481.9 460 56.1
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 2.0e-131 474.9 358 67.3
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 3.7e-122 444.1 376 59.8
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 5.1e-87 327.4 1374 26.3
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 4.9e-82 310.8 313 54.6
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 8.7e-79 300.1 1587 24.5
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 2.1e-72 278.9 264 53.4
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 3.1e-68 265.0 1284 25.9
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 6.5e-66 257.3 307 45.6
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.3e-62 244.6 196 64.3
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 7.2e-49 200.7 167 61.7
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 1.6e-48 199.5 1349 24.6
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 2.2e-45 189.1 239 44.4
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 7.7e-43 180.6 223 44.8
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 7.7e-43 180.6 129 72.1
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.4e-39 169.9 120 73.3
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 8.8e-39 167.2 139 61.9
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 7.5e-30 137.5 289 37.4


User provided reference genes

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