Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0007980 Simmondsia chinensis HOM05D007080 ORTHO05D008990 1.0e-54 216.9 140 100.0
Hund24550 Selenicereus undatus HOM05D007080 ORTHO05D008990 1.9e-21 106.3 70 78.6
CSS0023915 Camellia sinensis var. sinensis HOM05D007080 ORTHO05D008990 9.6e-21 104.0 70 77.1
CSS0031106 Camellia sinensis var. sinensis HOM05D007080 ORTHO05D008990 9.6e-21 104.0 70 77.1
AUR62030277 Chenopodium quinoa HOM05D007080 ORTHO05D008990 9.6e-21 104.0 70 74.3
Ah.04g150700 Amaranthus hybridus HOM05D007080 ORTHO05D008990 1.3e-20 103.6 70 75.7
THA.LOC104801692 Tarenaya hassleriana HOM05D007080 ORTHO05D008990 1.6e-20 103.2 70 77.1
AUR62018386 Chenopodium quinoa HOM05D007080 ORTHO05D008990 2.1e-20 102.8 70 74.3
EL10Ac3g07276 Beta vulgaris HOM05D007080 ORTHO05D008990 2.8e-20 102.4 70 75.7
Nitab4.5_0006059g0030 Nicotiana tabacum HOM05D007080 ORTHO05D008990 2.8e-20 102.4 70 74.3
RhsimUnG0018800 Rhododendron simsii HOM05D007080 ORTHO05D008990 2.8e-20 102.4 60 86.7
Migut.K00153 Erythranthe guttata HOM05D007080 ORTHO05D008990 4.8e-20 101.7 70 74.3
Eucgr.K01671 Eucalyptus grandis HOM05D007080 ORTHO05D008990 6.2e-20 101.3 70 74.3
Dinv36121 Davidia involucrata HOM05D007080 ORTHO05D008990 8.1e-20 100.9 70 72.9
Actinidia17969 Actinidia chinensis HOM05D007080 ORTHO05D008990 1.1e-19 100.5 70 74.3
Lalb_Chr14g0365571 Lupinus albus HOM05D007080 ORTHO05D008990 1.1e-19 100.5 70 72.9
Nitab4.5_0003160g0050 Nicotiana tabacum HOM05D007080 ORTHO05D008990 1.1e-19 100.5 70 72.9
vmacro07766 Vaccinium macrocarpon HOM05D007080 ORTHO05D008990 1.1e-19 100.5 70 75.7
CAN.G199.26 Capsicum annuum HOM05D007080 ORTHO05D008990 1.4e-19 100.1 70 74.3
Peaxi162Scf00076g00226 Petunia axillaris HOM05D007080 ORTHO05D008990 1.4e-19 100.1 70 71.4
Solyc06g065490.3 Solanum lycopersicum HOM05D007080 ORTHO05D008990 1.4e-19 100.1 70 74.3
Sopen06g023980 Solanum pennellii HOM05D007080 ORTHO05D008990 1.4e-19 100.1 70 74.3
PGSC0003DMG400026121 Solanum tuberosum HOM05D007080 ORTHO05D008990 1.4e-19 100.1 70 74.3
Medtr7g088880 Medicago truncatula HOM05D007080 ORTHO05D008990 1.8e-19 99.8 70 72.9
RhsimUnG0209400 Rhododendron simsii HOM05D007080 ORTHO05D008990 1.8e-19 99.8 60 83.3
SGA_v2.0_scaffold240G44138 Striga asiatica HOM05D007080 ORTHO05D008990 1.8e-19 99.8 70 72.9
Manes.09G000200 Manihot esculenta HOM05D007080 ORTHO05D008990 2.4e-19 99.4 70 72.9
Cpa.g.sc52.82 Carica papaya HOM05D007080 ORTHO05D008990 3.1e-19 99.0 70 71.4
Cfa017504 Carpinus fangiana HOM05D007080 ORTHO05D008990 5.3e-19 98.2 70 71.4
Potri.006G034300 Populus trichocarpa HOM05D007080 ORTHO05D008990 5.3e-19 98.2 60 80.0
Sabra06G0022700 Salix brachista HOM05D007080 ORTHO05D008990 5.3e-19 98.2 60 80.0
VMungo1383G2155 Vigna mungo HOM05D007080 ORTHO05D008990 5.3e-19 98.2 70 70.0
MELO3C005006.2 Cucumis melo HOM05D007080 ORTHO05D008990 6.9e-19 97.8 70 70.0
Duzib106G1879 Durio zibethinus HOM05D007080 ORTHO05D008990 6.9e-19 97.8 57 84.2
Gohir.A13G109100 Gossypium hirsutum HOM05D007080 ORTHO05D008990 6.9e-19 97.8 57 84.2
Gohir.D13G111900 Gossypium hirsutum HOM05D007080 ORTHO05D008990 6.9e-19 97.8 57 84.2
QL07p012688 Quercus lobata HOM05D007080 ORTHO05D008990 6.9e-19 97.8 69 71.0
QL07p012806 Quercus lobata HOM05D007080 ORTHO05D008990 6.9e-19 97.8 69 71.0
SalBow1G6984 Salvia bowleyana HOM05D007080 ORTHO05D008990 6.9e-19 97.8 70 70.0
TPR.G22690 Trifolium pratense HOM05D007080 ORTHO05D008990 6.9e-19 97.8 70 68.6
unitig_746.g26555 Utricularia gibba HOM05D007080 ORTHO05D008990 6.9e-19 97.8 70 72.9
GSVIVG01025792001 Vitis vinifera HOM05D007080 ORTHO05D008990 6.9e-19 97.8 70 71.4
ATR0307G091 Amborella trichopoda HOM05D007080 ORTHO05D008990 9.0e-19 97.4 57 82.5
MSTRG.26172 Avicennia marina HOM05D007080 ORTHO05D008990 9.0e-19 97.4 60 81.7
CANSAT54G2774 Cannabis sativa HOM05D007080 ORTHO05D008990 9.0e-19 97.4 70 71.4
Cc06_g20190 Coffea canephora HOM05D007080 ORTHO05D008990 9.0e-19 97.4 70 72.9
CsaV3_1G013070 Cucumis sativus L. HOM05D007080 ORTHO05D008990 9.0e-19 97.4 70 70.0
Gorai.013G125600 Gossypium raimondii HOM05D007080 ORTHO05D008990 9.0e-19 97.4 57 84.2
Lj1A1084T69 Lonicera japonica HOM05D007080 ORTHO05D008990 9.0e-19 97.4 70 71.4
Lj1g0027963 Lotus japonicus HOM05D007080 ORTHO05D008990 9.0e-19 97.4 60 81.7
Sed0014766 Sechium edule HOM05D007080 ORTHO05D008990 9.0e-19 97.4 68 73.5
Ca_08357_v3 Cicer arietinum L. HOM05D007080 ORTHO05D008990 1.2e-18 97.1 70 70.0
Hma1.2p1_1246F.1_g270150 Hydrangea macrophylla HOM05D007080 ORTHO05D008990 1.2e-18 97.1 56 85.7
Prupe.4G213200 Prunus persica HOM05D007080 ORTHO05D008990 1.2e-18 97.1 70 70.0
Thecc.05G122900 Theobroma cacao HOM05D007080 ORTHO05D008990 1.2e-18 97.1 70 71.4
HPP92_016890 Vanilla planifolia HOM05D007080 ORTHO05D008990 1.2e-18 97.1 57 82.5
A04p03450 Brassica napus HOM05D007080 ORTHO05D008990 1.5e-18 96.7 68 75.0
BraA04t16092Z Brassica rapa HOM05D007080 ORTHO05D008990 1.5e-18 96.7 68 75.0
Carub.0005s2340 Capsella rubella HOM05D007080 ORTHO05D008990 1.5e-18 96.7 68 75.0
Ciclev10012378m.g Citrus clementina HOM05D007080 ORTHO05D008990 1.5e-18 96.7 70 70.0
Haze_11136 Corylus avellana HOM05D007080 ORTHO05D008990 1.5e-18 96.7 70 70.0
Thhalv10006177m.g Eutrema salsugineum HOM05D007080 ORTHO05D008990 1.5e-18 96.7 70 71.4
Nn7g36949 Nelumbo nucifera HOM05D007080 ORTHO05D008990 1.5e-18 96.7 60 80.0
Psat0s1940g0160 Pisum sativum HOM05D007080 ORTHO05D008990 1.5e-18 96.7 70 70.0
PGR142G4038 Punica granatum HOM05D007080 ORTHO05D008990 1.5e-18 96.7 70 71.4
Atru.chr1.1289 Acer truncatum HOM05D007080 ORTHO05D008990 2.0e-18 96.3 70 70.0
AT3G56650 Arabidopsis thaliana HOM05D007080 ORTHO05D008990 2.0e-18 96.3 70 71.4
TAR623G1372 Trochodendron aralioides HOM05D007080 ORTHO05D008990 2.6e-18 95.9 60 78.3
arahy.Tifrunner.gnm1.ann1.10W9XD Arachis hypogaea HOM05D007080 ORTHO05D008990 3.4e-18 95.5 67 70.1
arahy.Tifrunner.gnm1.ann1.A7U9PP Arachis hypogaea HOM05D007080 ORTHO05D008990 3.4e-18 95.5 67 70.1
RcHm_v2.0_Chr3g0492661 Rosa chinensis HOM05D007080 ORTHO05D008990 3.4e-18 95.5 70 70.0
TWI74G1494 Tripterygium wilfordii HOM05D007080 ORTHO05D008990 3.4e-18 95.5 70 70.0
Aa31LG10G11470 Aethionema arabicum HOM05D007080 ORTHO05D008990 4.5e-18 95.1 60 78.3
AL5G38020 Arabidopsis lyrata HOM05D007080 ORTHO05D008990 4.5e-18 95.1 70 70.0
BcaC02g09857 Brassica carinata HOM05D007080 ORTHO05D008990 4.5e-18 95.1 68 73.5
C04p35850 Brassica napus HOM05D007080 ORTHO05D008990 4.5e-18 95.1 68 73.5
BolC4t25215H Brassica oleracea HOM05D007080 ORTHO05D008990 4.5e-18 95.1 68 73.5
CDE02G2515 Ceratophyllum demersum HOM05D007080 ORTHO05D008990 4.5e-18 95.1 70 70.0
CARHR166760 Cardamine hirsuta HOM05D007080 ORTHO05D008990 5.8e-18 94.7 60 80.0
ClCG03G002390 Citrullus lanatus HOM05D007080 ORTHO05D008990 5.8e-18 94.7 58 77.6
BcaB02g08359 Brassica carinata HOM05D007080 ORTHO05D008990 7.6e-18 94.4 60 80.0
CiPaw.10G043000 Carya illinoinensis HOM05D007080 ORTHO05D008990 7.6e-18 94.4 70 68.6
PSO339G0420 Papaver somniferum HOM05D007080 ORTHO05D008990 7.6e-18 94.4 60 75.0
PSO384G3013 Papaver somniferum HOM05D007080 ORTHO05D008990 7.6e-18 94.4 60 75.0
Phvul.001G119100 Phaseolus vulgaris HOM05D007080 ORTHO05D008990 7.6e-18 94.4 70 67.1
FAN26G2541 Fragaria x ananassa HOM05D007080 ORTHO05D008990 1.3e-17 93.6 70 67.1
ECA248G2633 Erigeron canadensis HOM05D007080 ORTHO05D008990 1.7e-17 93.2 76 63.2
FvH4_1g28660 Fragaria vesca HOM05D007080 ORTHO05D008990 1.7e-17 93.2 70 67.1
FAN19G3092 Fragaria x ananassa HOM05D007080 ORTHO05D008990 1.7e-17 93.2 70 67.1
Glyma.03G123100 Glycine max HOM05D007080 ORTHO05D008990 1.7e-17 93.2 70 65.7
Glyma.19G126700 Glycine max HOM05D007080 ORTHO05D008990 1.7e-17 93.2 70 65.7
Lsat_1_v5_gn_5_157760 Lactuca sativa HOM05D007080 ORTHO05D008990 2.2e-17 92.8 70 65.7
MD03G1200900 Malus domestica HOM05D007080 ORTHO05D008990 2.2e-17 92.8 70 67.1
FAN28G0517 Fragaria x ananassa HOM05D007080 ORTHO05D008990 2.9e-17 92.4 60 75.0
Zm00001eb150500 Zea mays HOM05D007080 ORTHO05D008990 2.9e-17 92.4 57 80.7
Aqoxy1G00077 Aquilegia oxysepala HOM05D007080 ORTHO05D008990 3.8e-17 92.0 60 75.0
Os01g0805300 Oryza sativa ssp. japonica HOM05D007080 ORTHO05D008990 1.4e-16 90.1 57 78.9
RcHm_v2.0_Chr3g0492671 Rosa chinensis HOM05D007080 ORTHO05D008990 7.9e-15 84.3 52 82.7
Mapoly0008s0145 Marchantia polymorpha HOM05D007080 ORTHO05D008990 3.0e-14 82.4 60 66.7
CDE08G0245 Ceratophyllum demersum HOM05D007080 ORTHO05D008990 5.1e-14 81.6 58 70.7
Pp3c4_10510 Physcomitrium patens HOM05D007080 ORTHO05D008990 6.7e-14 81.3 60 63.3
AagrBONN_evm.TU.Sc2ySwM_228.1885 Anthoceros agrestis HOM05D007080 ORTHO05D008990 5.7e-13 78.2 57 66.7
SMO347G0313 Selaginella moellendorffii HOM05D007080 ORTHO05D008990 1.6e-12 76.6 58 60.3
VMungo1215G1337 Vigna mungo HOM05D007080 ORTHO05D008990 6.3e-12 74.7 41 82.9
CBR_g17613 Chara braunii HOM05D007080 ORTHO05D008990 9.0e-11 70.9 76 50.0
Cre06.g280150 Chlamydomonas reinhardtii HOM05D007080 ORTHO05D008990 2.3e-06 56.2 71 35.2
GSVIVG01025790001 Vitis vinifera HOM05D007080 ORTHO05D008990 3.0e-06 55.8 38 71.1


User provided reference genes

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