Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 0.0e+00 1637.1 980 100.0
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 2.7e-303 1045.4 986 66.4
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 3.0e-302 1042.0 1022 66.4
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 9.0e-299 1030.4 1001 66.5
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 4.5e-298 1028.1 983 67.0
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 6.7e-294 1014.2 992 64.4
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 6.9e-291 1004.2 988 65.8
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 4.5e-290 1001.5 1033 62.3
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 7.6e-290 1000.7 992 64.4
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 6.4e-289 997.7 1000 64.9
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 9.3e-288 993.8 989 65.6
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 6.0e-287 991.1 997 64.2
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 3.9e-286 988.4 998 64.7
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 7.4e-285 984.2 994 65.3
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 2.8e-284 982.2 1041 60.8
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 5.3e-283 978.0 985 63.5
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 6.9e-283 977.6 990 64.5
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.2e-282 976.9 1005 63.7
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 1.9e-280 969.5 968 63.8
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 4.6e-279 964.9 994 61.9
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 6.0e-279 964.5 991 65.3
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 1.1e-277 960.3 1029 61.4
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 1.6e-276 956.4 982 63.6
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 2.2e-276 956.1 1008 61.8
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 3.7e-276 955.3 982 65.1
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 5.3e-275 951.4 1048 60.9
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 2.0e-274 949.5 1026 59.6
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 2.6e-274 949.1 993 60.8
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 2.6e-274 949.1 990 63.1
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 2.6e-274 949.1 1007 60.8
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 3.4e-274 948.7 989 63.3
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 4.5e-274 948.3 1004 61.0
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 5.9e-274 948.0 995 63.7
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 7.6e-274 947.6 987 62.3
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 2.9e-273 945.7 991 63.1
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 1.9e-272 943.0 980 61.2
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.6e-271 939.9 1041 59.7
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.1e-271 939.5 987 63.5
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 4.6e-271 938.3 1000 61.5
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 7.9e-271 937.6 1053 59.0
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 1.0e-270 937.2 1008 63.9
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 1.3e-270 936.8 1156 56.6
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 1.3e-270 936.8 735 76.9
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 3.9e-270 935.3 1048 59.2
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 6.7e-270 934.5 1034 60.8
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 4.3e-269 931.8 1006 60.4
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 5.7e-269 931.4 992 63.3
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.8e-268 929.1 984 62.6
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 4.8e-268 928.3 984 63.1
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 9.1e-267 924.1 994 62.2
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 1.5e-266 923.3 1015 60.1
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 2.0e-266 922.9 987 59.2
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 2.6e-266 922.5 1009 61.1
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 3.4e-266 922.2 985 60.5
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 7.7e-266 921.0 984 61.6
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 1.0e-265 920.6 998 62.1
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 1.3e-265 920.2 1012 60.1
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 6.5e-265 917.9 998 61.1
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 6.5e-265 917.9 1028 60.3
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.7e-263 912.5 1037 59.6
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 3.6e-263 912.1 981 61.6
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 1.8e-262 909.8 986 59.1
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.9e-262 908.7 994 61.7
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 8.8e-262 907.5 1036 59.5
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 1.1e-261 907.1 988 59.8
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 2.0e-261 906.4 1011 59.1
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.3e-260 903.7 1076 59.1
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 1.1e-259 900.6 978 61.9
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 1.4e-259 900.2 986 60.1
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 6.9e-259 897.9 991 61.0
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 4.5e-258 895.2 1034 59.8
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 4.5e-258 895.2 1007 61.7
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 7.7e-258 894.4 988 60.6
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 5.5e-256 888.3 985 58.2
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 5.5e-256 888.3 1026 58.6
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.2e-255 887.1 992 59.5
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 2.1e-255 886.3 981 59.1
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 4.7e-255 885.2 1062 57.4
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 8.0e-255 884.4 1007 58.5
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 6.7e-254 881.3 992 61.0
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 3.3e-253 879.0 985 58.7
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 5.7e-253 878.2 1025 58.2
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 2.2e-252 876.3 997 60.1
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 3.7e-252 875.5 1035 58.8
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 4.8e-252 875.2 984 58.8
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 1.1e-251 874.0 1032 56.9
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 1.6e-250 870.2 1019 58.2
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 5.9e-250 868.2 1020 56.6
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 1.0e-249 867.5 1018 57.9
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 1.3e-249 867.1 1019 58.4
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 1.9e-248 863.2 1025 57.0
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 7.2e-248 861.3 1000 58.6
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 9.4e-248 860.9 982 59.8
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 4.7e-247 858.6 984 57.8
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 2.3e-246 856.3 1007 56.8
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 2.0e-245 853.2 1142 52.5
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 1.8e-243 846.7 1011 58.5
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 5.3e-243 845.1 1008 59.7
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 2.9e-241 839.3 986 58.9
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.5e-240 837.0 999 56.9
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 4.2e-240 835.5 1032 56.6
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 1.2e-239 833.9 684 74.7
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 3.6e-239 832.4 1014 55.9
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 8.0e-239 831.2 1159 51.3
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 3.0e-238 829.3 1013 57.2
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.2e-237 827.4 1023 55.5
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 3.3e-232 809.3 1005 57.3
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 4.2e-232 808.9 983 57.5
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 9.5e-232 807.7 995 57.0
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 1.7e-228 797.0 1014 53.9
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 1.1e-227 794.3 985 56.0
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 7.8e-226 788.1 985 55.7
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.6e-224 781.9 1016 54.1
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 2.8e-223 779.6 994 54.6
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 9.2e-219 764.6 1018 54.2
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 2.7e-218 763.1 1051 50.8
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 3.6e-207 726.1 1050 49.0
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 5.4e-203 712.2 1002 52.6
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 1.9e-184 650.6 1077 46.2
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 1.3e-180 637.9 479 79.1
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 5.1e-169 599.4 895 49.6
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 5.6e-168 595.9 1000 44.7
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 2.7e-162 577.0 985 44.6
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 9.4e-155 552.0 666 56.9
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 1.6e-154 551.2 545 64.4
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.3e-153 547.4 790 51.1
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 5.7e-136 489.6 718 47.9
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 1.7e-116 424.9 390 66.2
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 3.3e-107 394.0 1031 35.2
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 2.6e-72 278.1 523 42.8
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 5.1e-68 263.8 523 42.6
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 2.1e-58 231.9 331 50.2
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.7e-58 231.1 318 53.8
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 2.5e-51 208.4 137 86.1
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 8.2e-50 203.4 160 73.1
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 2.6e-48 198.4 199 61.3
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 5.7e-43 180.6 337 41.5
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 6.9e-41 173.7 644 30.7
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 9.7e-35 153.3 357 36.7
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 8.2e-34 150.2 118 73.7
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.1e-33 149.8 233 48.1
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 4.1e-33 147.9 493 31.2
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 9.1e-33 146.7 90 88.9
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 5.0e-31 141.0 120 70.0
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 3.2e-30 138.3 88 81.8
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 2.3e-28 132.1 83 84.3
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 6.7e-28 130.6 398 33.4
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 3.7e-26 124.8 152 53.9
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 4.8e-26 124.4 103 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 8.2e-26 123.6 355 33.2
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 1.8e-25 122.5 465 31.2
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 3.1e-25 121.7 79 86.1
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 4.1e-25 121.3 99 72.7
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 9.1e-25 120.2 397 33.0
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 9.1e-25 120.2 445 32.6
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 1.0e-23 116.7 583 29.2
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.9e-22 112.5 606 27.2
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 4.2e-22 111.3 156 51.9
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 2.1e-21 109.0 84 71.4
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 3.6e-21 108.2 63 92.1
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 8.0e-21 107.1 76 81.6
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 2.0e-19 102.4 134 50.0
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 5.7e-19 100.9 701 24.5
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 8.2e-18 97.1 97 63.9
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 5.3e-17 94.4 74 74.3
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 1.6e-16 92.8 138 50.7
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 2.0e-16 92.4 72 68.1
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 2.6e-16 92.0 88 64.8
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 2.6e-16 92.0 62 85.5
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 4.2e-14 84.7 60 78.3
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 4.2e-14 84.7 129 49.6
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 1.6e-13 82.8 65 72.3
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 1.6e-13 82.8 65 72.3
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 3.0e-12 78.6 88 59.1
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 8.8e-12 77.0 79 60.8
Thecc.08G046800 Theobroma cacao HOM05D003521 ORTHO05D000476 4.1e-09 68.2 71 63.4
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 7.0e-09 67.4 181 38.1
EL10Ac6g13433 Beta vulgaris HOM05D000200 ORTHO05D000262 1.7e-07 62.8 80 47.5
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 1.7e-07 62.8 45 71.1


User provided reference genes

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