Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1231.9 601 100.0
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 1.1e-283 979.5 599 78.5
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 9.8e-280 966.5 596 77.9
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 2.7e-277 958.4 598 77.4
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 1.5e-275 952.6 596 77.2
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 1.9e-275 952.2 601 77.9
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 7.2e-275 950.3 603 76.0
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 9.4e-275 949.9 599 77.0
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 3.0e-273 944.9 596 77.3
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 5.7e-272 940.6 603 75.1
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 5.7e-272 940.6 598 75.9
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 2.8e-271 938.3 603 75.6
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 3.7e-271 937.9 603 75.5
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 4.9e-271 937.6 603 75.0
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 8.3e-271 936.8 599 75.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 1.8e-270 935.6 592 75.2
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 9.2e-270 933.3 603 74.6
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 9.2e-270 933.3 598 75.3
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 2.7e-269 931.8 600 75.7
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 2.7e-269 931.8 602 75.7
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 5.9e-269 930.6 592 75.3
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 7.7e-269 930.2 598 76.9
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 7.7e-269 930.2 601 74.4
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 1.0e-268 929.9 594 75.8
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.0e-268 929.9 599 74.6
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 1.3e-268 929.5 604 74.3
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 5.0e-268 927.5 603 74.1
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 1.1e-267 926.4 590 74.6
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 3.3e-267 924.9 597 75.2
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 5.6e-267 924.1 596 74.3
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 7.3e-267 923.7 592 75.0
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 9.5e-267 923.3 591 74.5
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 1.8e-265 919.1 603 73.5
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 5.2e-265 917.5 602 74.4
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.2e-264 916.4 593 74.0
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 5.7e-264 914.1 596 75.7
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 9.8e-264 913.3 597 75.0
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 2.2e-263 912.1 596 75.3
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.2e-263 912.1 598 73.7
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 3.7e-263 911.4 603 72.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 4.9e-263 911.0 593 73.7
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 8.3e-263 910.2 593 75.4
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 1.1e-262 909.8 603 73.0
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.8e-262 909.1 598 72.9
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 2.4e-262 908.7 590 73.2
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.2e-262 908.3 596 75.0
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 5.4e-262 907.5 596 73.8
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.2e-261 906.4 597 72.7
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 5.9e-261 904.0 587 74.6
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 1.3e-260 902.9 594 73.4
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.1e-259 899.8 596 73.2
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 1.5e-259 899.4 604 71.9
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 2.5e-259 898.7 596 73.8
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 5.6e-259 897.5 556 77.0
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 2.8e-258 895.2 595 73.1
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 3.1e-257 891.7 595 72.4
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 4.0e-257 891.3 598 72.2
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 6.8e-257 890.6 591 72.3
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 4.4e-256 887.9 596 73.2
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 2.2e-255 885.6 593 72.2
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 2.9e-255 885.2 595 71.9
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 2.9e-255 885.2 595 71.8
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 1.4e-254 882.9 599 71.5
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 9.2e-254 880.2 597 71.7
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.1e-251 873.2 611 71.0
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 5.6e-251 870.9 629 68.8
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 7.3e-251 870.5 591 71.9
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 7.3e-251 870.5 592 71.6
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 2.1e-250 869.0 594 71.0
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.1e-250 869.0 616 69.0
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 6.2e-250 867.5 591 71.7
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 1.4e-249 866.3 591 71.7
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 6.8e-249 864.0 592 71.8
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 1.5e-248 862.8 590 71.5
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.5e-248 862.8 611 71.0
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 2.0e-248 862.4 593 70.2
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 3.4e-248 861.7 591 71.1
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 1.3e-247 859.8 590 71.0
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 2.2e-247 859.0 665 65.1
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 3.5e-245 851.7 590 70.8
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 3.5e-245 851.7 592 71.3
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 4.6e-245 851.3 611 70.0
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.3e-244 849.0 556 73.2
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 1.4e-241 839.7 593 67.6
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.2e-240 836.6 620 68.5
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 2.9e-239 832.0 593 67.8
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 7.1e-238 827.4 594 67.5
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 7.8e-237 823.9 604 68.0
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.4e-230 802.4 602 66.4
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 4.2e-230 801.6 593 66.6
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 4.2e-230 801.6 592 67.6
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 1.5e-227 793.1 520 74.4
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 3.4e-224 781.9 600 63.0
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 8.4e-215 750.7 607 62.1
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 5.3e-209 731.5 594 63.6
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 6.0e-205 718.0 603 61.9
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 6.9e-193 677.9 437 75.3
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 2.0e-184 649.8 595 55.0
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 6.5e-183 644.8 591 55.5
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 3.2e-174 615.9 413 74.1
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 4.2e-174 615.5 445 67.9
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 3.7e-162 575.9 384 71.1
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 6.3e-162 575.1 632 53.0
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 1.6e-160 570.5 776 42.9
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 2.5e-158 563.1 592 49.7
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 3.2e-158 562.8 776 42.5
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.6e-157 560.5 494 56.1
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 7.8e-144 515.0 594 47.5
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 4.7e-141 505.8 620 45.6
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 3.6e-125 453.0 631 43.9
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 3.4e-115 419.9 303 71.3
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.1e-113 414.8 637 40.5
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 2.4e-113 413.7 610 39.8
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 2.3e-111 407.1 726 37.2
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.8e-76 291.2 200 69.5
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.2e-74 284.3 248 61.3
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.6e-72 276.9 223 67.3
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 5.5e-57 226.5 163 65.0
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.8e-55 221.5 171 64.9
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.5e-54 218.4 131 80.2
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 8.9e-39 166.0 207 48.8
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 3.1e-36 157.5 102 74.5
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 4.5e-35 153.7 115 60.9
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 2.4e-28 131.3 100 68.0
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 1.1e-25 122.5 89 67.4
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 2.5e-25 121.3 83 62.7
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.1e-20 105.9 148 45.3
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.1e-15 89.4 62 64.5
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 6.8e-15 86.7 63 65.1
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 1.3e-13 82.4 59 66.1
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.4e-12 79.0 73 52.1
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 9.2e-12 76.3 43 79.1
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 3.9e-10 70.9 58 53.4


User provided reference genes

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