Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 5.2e-48 194.1 102 100.0
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 5.2e-48 194.1 102 100.0
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 2.2e-35 152.1 102 75.5
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.5e-34 149.4 102 73.5
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 1.9e-34 149.1 102 73.5
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 5.5e-34 147.5 100 74.0
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 7.2e-34 147.1 101 72.3
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.2e-33 146.4 102 72.5
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 2.7e-33 145.2 100 72.0
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 4.7e-33 144.4 102 71.6
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 8.0e-33 143.7 102 70.6
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 8.0e-33 143.7 102 71.6
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 1.4e-32 142.9 103 73.8
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.8e-32 142.5 102 71.6
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 2.3e-32 142.1 102 72.5
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 5.2e-32 141.0 102 70.6
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 5.2e-32 141.0 100 73.0
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 5.2e-32 141.0 100 73.0
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 5.2e-32 141.0 102 70.6
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 6.8e-32 140.6 100 71.0
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 6.8e-32 140.6 100 71.0
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 8.8e-32 140.2 100 73.0
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 8.8e-32 140.2 100 72.0
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 1.2e-31 139.8 102 71.6
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 2.0e-31 139.0 102 72.5
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 2.6e-31 138.7 102 68.6
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 2.6e-31 138.7 100 72.0
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 2.6e-31 138.7 102 67.6
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 5.7e-31 137.5 102 65.7
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 5.7e-31 137.5 102 69.6
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 5.7e-31 137.5 102 67.6
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 9.8e-31 136.7 100 72.0
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.3e-30 136.3 102 71.6
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 1.3e-30 136.3 102 71.6
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.3e-30 136.3 102 67.6
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.7e-30 136.0 102 69.6
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 3.7e-30 134.8 102 68.6
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 6.3e-30 134.0 102 66.7
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 8.3e-30 133.7 100 65.0
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 8.3e-30 133.7 102 67.6
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 8.3e-30 133.7 100 68.0
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 1.8e-29 132.5 102 64.7
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 1.8e-29 132.5 102 64.7
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.8e-29 132.5 102 64.7
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.8e-29 132.5 100 65.0
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 2.4e-29 132.1 102 65.7
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.1e-29 131.3 102 65.7
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 4.1e-29 131.3 100 70.0
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 4.1e-29 131.3 102 65.7
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 5.4e-29 131.0 102 61.8
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 9.1e-29 130.2 102 64.7
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 9.1e-29 130.2 100 65.0
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 9.1e-29 130.2 102 62.7
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 9.1e-29 130.2 100 65.0
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 1.2e-28 129.8 100 63.0
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 1.2e-28 129.8 100 67.0
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 1.6e-28 129.4 102 63.7
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.6e-28 129.4 100 65.0
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 1.6e-28 129.4 100 65.0
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.6e-28 129.4 102 64.7
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 1.6e-28 129.4 102 64.7
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.6e-28 129.4 102 62.7
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.6e-28 129.4 102 62.7
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 2.0e-28 129.0 102 63.7
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 2.0e-28 129.0 102 63.7
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 2.0e-28 129.0 101 64.4
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 2.0e-28 129.0 101 64.4
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.7e-28 128.6 102 64.7
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 2.7e-28 128.6 100 67.0
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 3.5e-28 128.3 102 64.7
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 3.5e-28 128.3 102 64.7
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 3.5e-28 128.3 102 62.7
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 5.9e-28 127.5 102 61.8
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 7.7e-28 127.1 102 63.7
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 7.7e-28 127.1 102 64.7
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 7.7e-28 127.1 102 63.7
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 2.3e-27 125.6 100 63.0
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 2.3e-27 125.6 100 63.0
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 2.3e-27 125.6 102 61.8
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 2.9e-27 125.2 102 63.7
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 2.9e-27 125.2 102 63.7
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 3.8e-27 124.8 100 63.0
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 3.8e-27 124.8 100 63.0
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 3.8e-27 124.8 100 63.0
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.0e-27 124.4 102 61.8
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.0e-27 124.4 102 61.8
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 5.0e-27 124.4 102 61.8
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 5.0e-27 124.4 102 61.8
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 6.5e-27 124.0 102 63.7
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.5e-26 122.9 102 63.7
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.9e-26 122.5 102 62.7
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 2.5e-26 122.1 102 61.8
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 2.5e-26 122.1 90 67.8
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 3.3e-26 121.7 102 61.8
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 3.3e-26 121.7 102 63.7
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 4.2e-26 121.3 102 62.7
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 9.5e-26 120.2 90 66.7
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 9.5e-26 120.2 90 66.7
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 2.8e-25 118.6 100 61.0
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 1.0e-24 116.7 100 60.0
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 6.8e-24 114.0 98 58.2
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 1.2e-23 113.2 98 58.2
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 7.5e-23 110.5 100 57.0
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 7.5e-23 110.5 100 54.0
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 7.5e-23 110.5 100 57.0
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 4.9e-22 107.8 100 56.0
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.9e-22 107.8 72 73.6
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 2.0e-20 102.4 91 61.5
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 4.5e-20 101.3 98 55.1
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.1e-17 92.4 79 58.2
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.0e-16 90.1 102 52.9
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.2e-12 76.6 54 70.4
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 6.6e-11 70.9 100 41.0
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 1.1e-10 70.1 98 39.8
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.5e-10 69.7 80 48.8
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 5.2e-08 61.2 70 42.9
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 1.5e-07 59.7 45 62.2
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 1.5e-07 59.7 95 35.8
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 2.2e-06 55.8 98 34.7


User provided reference genes

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