Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.2e-191 672.2 343 100.0
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 1.4e-76 290.8 354 49.4
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.2e-70 269.6 357 47.6
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.6e-64 250.8 343 44.6
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 7.7e-64 248.4 355 44.8
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 3.8e-63 246.1 337 44.8
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.0e-63 245.7 350 44.6
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 4.2e-62 242.7 337 45.7
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 5.5e-62 242.3 338 44.7
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 9.5e-62 241.5 349 43.0
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-61 241.1 344 44.5
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.8e-61 240.0 353 44.2
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 4.7e-61 239.2 350 44.6
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 4.7e-61 239.2 350 43.4
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 1.2e-59 234.6 346 43.9
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.5e-59 234.2 337 43.9
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.4e-59 233.0 338 43.2
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 3.4e-59 233.0 347 43.8
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 7.5e-59 231.9 338 43.2
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 9.8e-59 231.5 338 43.2
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.3e-58 231.1 337 43.6
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 4.9e-58 229.2 343 42.0
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 7.0e-57 225.3 327 43.4
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 2.7e-56 223.4 345 42.0
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 4.5e-56 222.6 311 44.7
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.7e-55 220.7 344 41.9
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.9e-55 219.9 359 39.8
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 3.9e-55 219.5 346 43.4
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 3.9e-55 219.5 345 41.2
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 8.6e-55 218.4 344 41.9
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 8.6e-55 218.4 347 42.4
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 8.6e-55 218.4 349 41.8
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.9e-54 217.2 352 41.5
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 3.3e-54 216.5 343 43.7
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 4.3e-54 216.1 335 44.5
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 4.3e-54 216.1 347 42.4
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 7.3e-54 215.3 342 40.6
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 3.6e-53 213.0 360 39.7
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 4.7e-53 212.6 339 41.9
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 8.0e-53 211.8 345 42.6
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 2.3e-52 210.3 338 40.8
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 3.1e-52 209.9 344 39.8
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 4.0e-52 209.5 344 40.4
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 5.2e-52 209.1 341 40.8
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 6.8e-52 208.8 348 39.7
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 6.8e-52 208.8 346 39.9
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 6.8e-52 208.8 296 43.2
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 3.4e-51 206.5 313 43.8
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.4e-51 206.5 290 44.1
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.7e-50 204.1 353 39.7
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.9e-49 200.7 336 39.9
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.0e-49 198.7 353 39.4
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 9.2e-49 198.4 290 45.5
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.2e-48 198.0 341 39.9
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-48 198.0 344 39.0
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.2e-48 198.0 356 38.8
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.0e-47 193.4 342 36.8
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 3.9e-47 193.0 295 42.0
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 9.5e-46 188.3 348 38.2
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.2e-45 188.0 384 35.2
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.2e-45 188.0 322 41.0
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.1e-45 187.2 322 41.3
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 8.0e-45 185.3 340 34.7
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.8e-44 184.1 388 34.8
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.8e-44 184.1 306 39.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 2.3e-44 183.7 387 35.7
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.1e-44 183.3 389 35.2
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.8e-44 182.2 290 41.4
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 8.9e-44 181.8 303 41.6
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.2e-43 181.4 291 41.6
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.5e-43 181.0 342 37.4
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.5e-43 181.0 303 39.6
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.0e-43 180.6 377 34.0
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.4e-43 179.9 342 37.4
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.4e-43 179.9 388 35.6
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 7.5e-43 178.7 291 41.2
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.8e-43 178.3 389 35.0
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.3e-42 177.9 342 39.2
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 4.9e-42 176.0 339 35.7
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 6.4e-42 175.6 461 31.9
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.1e-41 174.9 333 36.9
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.4e-41 174.5 343 36.7
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.9e-41 174.1 312 39.1
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 3.2e-41 173.3 339 37.5
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 3.5e-40 169.9 313 36.7
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 4.6e-40 169.5 291 39.2
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 7.8e-40 168.7 253 39.9
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 7.8e-40 168.7 239 44.4
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.0e-39 166.8 337 38.0
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 4.3e-38 162.9 289 37.4
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 9.5e-38 161.8 384 31.8
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 3.1e-36 156.8 338 34.6
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 4.0e-36 156.4 300 39.7
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 8.9e-36 155.2 299 36.8
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.5e-35 154.5 240 41.7
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 3.4e-35 153.3 309 37.5
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 9.9e-35 151.8 332 34.0
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.1e-33 148.3 312 34.9
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 2.4e-33 147.1 346 36.1
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.1e-33 146.4 261 34.5
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 5.4e-33 146.0 312 35.3
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 5.4e-33 146.0 312 35.3
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.1e-33 145.6 255 38.0
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.1e-32 144.1 191 47.6
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 2.7e-32 143.7 307 37.5
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 4.6e-32 142.9 301 35.9
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 4.6e-32 142.9 301 35.9
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 6.0e-32 142.5 280 37.9
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.3e-31 141.4 304 36.8
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.3e-31 141.4 253 38.7
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 2.3e-31 140.6 305 35.4
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 6.6e-31 139.0 170 48.2
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.1e-30 138.3 310 36.5
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 7.3e-30 135.6 170 48.2
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 2.1e-29 134.0 253 37.5
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.8e-29 133.7 256 37.1
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 4.7e-29 132.9 316 34.5
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.5e-24 116.7 283 33.2
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 5.6e-22 109.4 163 44.8
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 7.3e-22 109.0 107 57.0
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-21 106.7 243 29.2
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 4.4e-19 99.8 174 41.4
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.7e-18 97.8 179 39.7
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.7e-18 97.8 235 31.1
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 2.4e-17 94.0 181 35.4
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 5.4e-17 92.8 158 41.8
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 4.3e-14 83.2 120 42.5
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.6e-14 82.0 161 34.2
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.8e-13 79.7 153 39.2
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 8.1e-13 79.0 122 40.2
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.6e-11 73.9 120 37.5
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 5.8e-11 72.8 92 42.4
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 3.8e-10 70.1 120 34.2
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 6.4e-10 69.3 82 37.8
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.8e-07 61.2 183 31.7
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.1e-06 58.5 70 45.7
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 5.6e-06 56.2 62 50.0


User provided reference genes

Program Settings