Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.6e-152 541.6 281 100.0
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 3.3e-97 359.0 286 67.1
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 9.1e-95 350.9 286 65.4
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 6.5e-93 344.7 286 62.6
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-92 343.6 286 61.9
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.9e-92 343.2 285 62.8
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 2.5e-92 342.8 287 62.7
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 2.5e-92 342.8 286 62.6
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 1.2e-91 340.5 286 61.5
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.2e-91 340.5 282 62.8
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 2.1e-91 339.7 286 63.3
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 2.7e-91 339.3 286 61.2
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.6e-91 339.0 286 62.2
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.7e-91 338.6 286 63.3
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 6.1e-91 338.2 286 60.8
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 7.9e-91 337.8 286 59.8
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 6.7e-90 334.7 286 62.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 6.7e-90 334.7 286 60.5
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.5e-89 333.6 286 61.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 7.4e-89 331.3 286 61.2
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.4e-89 331.3 286 61.2
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 7.4e-89 331.3 287 60.3
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 9.7e-89 330.9 287 60.3
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 9.7e-89 330.9 280 59.3
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 1.3e-88 330.5 287 61.7
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.2e-88 329.7 280 61.1
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 2.8e-88 329.3 286 60.5
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 3.7e-88 328.9 286 60.5
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 4.8e-88 328.6 286 59.1
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 6.3e-88 328.2 286 57.7
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 8.2e-88 327.8 286 60.8
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.4e-87 326.2 286 60.5
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.1e-87 325.9 286 59.1
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.0e-87 324.7 286 60.5
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 9.1e-87 324.3 287 60.3
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 5.9e-86 321.6 286 57.7
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 7.7e-86 321.2 286 60.5
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.3e-85 320.5 286 59.8
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.3e-85 320.5 288 58.3
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 2.2e-85 319.7 286 59.8
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 5.0e-85 318.5 293 57.7
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 6.5e-85 318.2 304 56.9
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.5e-84 317.0 286 57.3
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 4.2e-84 315.5 286 59.4
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 9.4e-84 314.3 287 59.6
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.2e-83 313.9 286 57.0
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.6e-83 313.5 249 64.3
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.6e-83 313.5 287 58.5
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.8e-82 310.1 285 58.9
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.3e-82 309.7 286 59.4
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.0e-82 308.9 286 58.0
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 4.0e-82 308.9 287 57.1
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 5.2e-82 308.5 284 58.5
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 8.8e-82 307.8 323 54.8
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.2e-81 307.4 286 58.7
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.5e-81 307.0 286 57.7
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.5e-81 307.0 286 58.4
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 5.7e-81 305.1 286 58.4
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 2.2e-80 303.1 286 56.6
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.3e-80 301.6 286 55.9
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 3.1e-79 299.3 288 57.3
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 5.3e-79 298.5 315 51.7
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 7.0e-79 298.1 288 57.3
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 9.1e-79 297.7 285 57.2
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-78 297.4 282 56.4
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.2e-78 297.4 282 56.4
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.0e-77 294.3 286 58.0
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.7e-77 293.5 285 56.5
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 5.0e-77 292.0 286 55.2
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 1.9e-76 290.0 286 56.6
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.2e-76 289.3 285 55.1
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 3.2e-76 289.3 286 56.3
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 9.4e-76 287.7 294 54.4
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.1e-75 286.6 286 54.2
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.1e-75 286.6 286 55.6
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 2.7e-75 286.2 286 55.2
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.3e-74 283.1 262 58.4
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 7.5e-73 278.1 285 54.0
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 1.4e-71 273.9 285 54.4
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 9.1e-71 271.2 286 54.2
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.5e-70 269.2 288 52.8
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 8.6e-69 264.6 327 47.7
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 1.1e-68 264.2 260 54.6
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.9e-68 263.5 293 48.8
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.5e-68 263.1 298 51.3
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 9.5e-68 261.2 329 49.5
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 2.3e-66 256.5 264 51.1
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 2.6e-65 253.1 255 56.1
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 2.6e-65 253.1 280 51.1
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 3.4e-65 252.7 286 47.2
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 7.5e-65 251.5 280 51.1
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 2.8e-64 249.6 290 47.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.4e-63 247.3 280 49.6
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 4.1e-63 245.7 289 46.7
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 4.1e-63 245.7 286 47.2
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 5.4e-63 245.4 280 51.1
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 7.0e-63 245.0 283 50.9
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 1.7e-61 240.4 281 50.2
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 2.1e-59 233.4 281 48.8
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 3.0e-58 229.6 291 45.4
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 5.7e-57 225.3 295 45.4
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.8e-57 224.6 191 59.2
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 2.9e-56 223.0 255 49.8
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 1.4e-55 220.7 290 44.5
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 3.2e-55 219.5 293 44.7
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 1.2e-54 217.6 289 43.6
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.6e-54 217.2 289 43.3
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 7.8e-54 214.9 291 43.6
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.3e-53 214.2 247 48.6
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.7e-53 213.8 291 43.6
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.3e-53 213.4 291 43.3
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 3.0e-53 213.0 286 44.1
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 3.9e-53 212.6 289 42.9
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 3.9e-53 212.6 289 42.9
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 3.9e-53 212.6 289 41.9
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.1e-52 211.1 279 45.5
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.5e-52 209.9 289 42.9
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 3.3e-52 209.5 289 42.6
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 5.6e-52 208.8 291 40.2
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 9.5e-52 208.0 297 42.1
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 2.0e-49 200.3 275 46.5
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 3.4e-49 199.5 291 40.5
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 4.9e-48 195.7 291 39.5
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 4.9e-48 195.7 291 39.5
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 4.9e-48 195.7 290 39.0
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 5.0e-45 185.7 303 38.9
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 8.9e-42 174.9 288 36.8
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 2.6e-41 173.3 143 62.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 4.4e-41 172.6 292 36.6
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 3.7e-40 169.5 288 36.1
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.6e-35 152.9 170 47.1
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 4.0e-34 149.4 218 40.8
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 3.4e-33 146.4 294 33.3
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 7.6e-33 145.2 297 32.7
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 7.1e-31 138.7 116 62.9
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.1e-29 132.5 298 31.2
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 4.3e-28 129.4 119 58.0
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 2.4e-18 97.1 85 62.4
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 9.0e-18 95.1 259 32.8
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 4.5e-17 92.8 83 63.9
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 1.7e-16 90.9 83 59.0
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.1e-15 88.2 82 57.3
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.2e-15 86.3 70 67.1
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 5.6e-12 75.9 61 59.0
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.3e-08 64.7 75 53.3
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.4e-07 61.2 139 32.4
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 3.2e-07 60.1 89 37.1
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.7e-06 57.0 42 69.0


User provided reference genes

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