Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1173.3 623 100.0
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 4.7e-277 957.6 622 78.6
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 7.0e-273 943.7 616 81.0
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 7.8e-272 940.3 617 78.4
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 1.2e-269 932.9 624 79.2
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 6.8e-268 927.2 632 77.5
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 4.4e-267 924.5 611 78.4
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 1.3e-266 922.9 636 78.8
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 2.2e-266 922.2 622 77.5
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 1.9e-265 919.1 623 77.5
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 4.1e-265 917.9 639 78.1
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 5.4e-265 917.5 626 77.5
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.0e-264 915.6 623 75.9
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 4.6e-264 914.4 629 75.5
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 1.3e-263 912.9 622 80.4
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 2.3e-263 912.1 618 78.3
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 5.0e-263 911.0 622 80.2
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 8.6e-263 910.2 623 79.5
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.6e-263 910.2 621 79.7
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 1.1e-262 909.8 619 77.2
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 3.3e-262 908.3 621 79.5
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 5.6e-262 907.5 623 79.3
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 5.6e-262 907.5 619 77.9
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 7.3e-262 907.1 623 78.3
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 1.6e-261 906.0 620 76.8
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 4.7e-261 904.4 623 79.0
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 6.2e-261 904.0 623 74.6
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 1.1e-260 903.3 636 77.2
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 1.4e-260 902.9 621 78.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.4e-260 902.9 633 78.0
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 1.8e-260 902.5 643 76.7
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.1e-260 901.7 632 77.8
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 4.0e-260 901.4 636 77.7
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 5.2e-260 901.0 632 77.8
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 1.5e-259 899.4 634 77.4
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 2.0e-259 899.0 624 78.7
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 1.3e-258 896.3 625 76.2
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 6.4e-258 894.0 629 74.6
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 8.3e-258 893.6 615 76.7
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 1.1e-257 893.3 626 75.9
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 1.4e-257 892.9 615 76.4
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 1.4e-257 892.9 622 75.6
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 4.1e-257 891.3 628 75.0
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 5.4e-257 891.0 629 74.6
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 7.1e-257 890.6 615 76.7
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 9.2e-257 890.2 624 75.3
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 7.8e-256 887.1 622 76.4
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 1.3e-255 886.3 620 76.6
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 3.0e-255 885.2 627 78.1
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 5.6e-254 880.9 625 73.9
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.6e-253 879.4 628 73.1
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 2.1e-253 879.0 628 72.9
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 2.8e-253 878.6 627 72.9
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 3.6e-253 878.2 621 77.3
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 6.2e-253 877.5 627 73.2
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 6.2e-253 877.5 629 72.8
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 6.2e-253 877.5 626 76.7
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 1.1e-252 876.7 628 73.1
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 5.2e-252 874.4 627 73.5
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 8.9e-252 873.6 623 77.0
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 4.4e-251 871.3 593 79.1
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 4.9e-250 867.8 628 72.5
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 4.9e-250 867.8 614 75.7
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 6.4e-250 867.5 636 71.9
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 1.9e-249 865.9 624 76.0
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 9.2e-249 863.6 619 73.7
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 6.0e-248 860.9 625 75.5
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 2.3e-247 859.0 623 74.5
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 8.6e-247 857.1 620 73.9
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 6.4e-242 840.9 621 73.1
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 8.4e-242 840.5 623 74.0
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 3.2e-241 838.6 635 69.8
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 4.2e-241 838.2 623 70.3
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 4.3e-238 828.2 558 78.5
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 3.8e-234 815.1 582 76.3
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.2e-232 810.1 621 73.1
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 2.1e-232 809.3 630 71.3
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 3.5e-232 808.5 615 69.6
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 1.3e-231 806.6 615 68.1
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 6.2e-229 797.7 623 72.1
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 1.5e-227 793.1 623 66.3
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 5.8e-227 791.2 620 67.4
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 9.3e-225 783.9 626 71.2
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 3.5e-224 781.9 622 67.0
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 6.0e-224 781.2 624 66.5
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.4e-211 738.8 525 75.6
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 2.7e-208 729.2 539 71.2
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 2.7e-208 729.2 539 71.2
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.7e-197 693.3 508 75.2
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 2.1e-184 649.8 623 60.8
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.1e-182 644.0 573 67.7
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.1e-177 627.5 483 68.7
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 4.7e-176 622.1 619 54.1
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 1.4e-164 583.9 614 51.8
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 4.5e-163 578.9 468 69.2
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 3.5e-155 552.7 616 49.2
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 3.6e-152 542.7 417 71.7
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 7.3e-145 518.5 612 49.2
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 3.8e-133 479.6 266 86.8
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 3.5e-131 473.0 632 41.9
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 6.0e-131 472.2 610 43.1
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 9.6e-129 464.9 288 80.9
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 4.7e-128 462.6 355 71.0
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 1.6e-91 341.3 210 81.4
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 4.1e-87 326.6 309 65.4
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 9.4e-76 288.9 197 73.1
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 4.9e-48 196.8 111 85.6
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.1e-47 194.1 113 80.5
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 5.0e-45 186.8 158 63.3
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.5e-44 185.3 119 76.5
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 9.5e-44 182.6 144 62.5
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 5.6e-36 156.8 107 76.6
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 3.1e-34 151.0 101 79.2
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 6.8e-34 149.8 210 47.1
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.2e-33 149.1 87 82.8
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 7.1e-23 113.2 56 92.9
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-19 102.1 82 67.1
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 2.8e-19 101.3 69 71.0
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.8e-18 98.6 170 37.6
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.0e-17 95.1 72 66.7
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.9e-15 88.6 89 52.8
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.2e-15 87.8 53 81.1
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.3e-13 81.6 60 76.7
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 3.9e-13 80.9 52 73.1
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.8e-11 74.7 71 63.4
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 2.9e-08 64.7 42 73.8
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 3.8e-08 64.3 49 67.3


User provided reference genes

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