Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 7.2e-253 876.7 423 100.0
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 3.0e-126 456.1 420 55.2
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 4.1e-123 445.7 418 54.1
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 4.5e-122 442.2 446 50.7
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 3.0e-118 429.5 425 53.6
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 2.0e-114 416.8 451 49.2
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 1.0e-113 414.5 453 48.8
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 2.9e-113 412.9 420 52.4
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 3.7e-108 396.0 441 47.8
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 4.1e-107 392.5 418 48.6
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 9.1e-107 391.3 443 47.2
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.6e-106 390.6 418 47.8
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 2.7e-106 389.8 445 46.7
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 2.7e-106 389.8 446 48.7
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 4.5e-106 389.0 443 47.0
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 5.9e-106 388.7 446 46.0
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 7.7e-106 388.3 448 47.5
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 5.0e-105 385.6 445 46.7
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 8.5e-105 384.8 449 45.4
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 2.5e-104 383.3 445 46.5
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 1.6e-103 380.6 432 46.8
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 2.1e-103 380.2 413 48.9
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 3.6e-103 379.4 443 46.0
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 6.1e-103 378.6 447 45.9
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 6.1e-103 378.6 443 45.1
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 6.1e-103 378.6 447 46.3
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 1.0e-102 377.9 421 48.9
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 4.0e-102 375.9 429 47.6
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 1.2e-101 374.4 445 44.7
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 4.4e-101 372.5 430 47.2
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 9.8e-101 371.3 449 44.1
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 4.8e-100 369.0 429 47.6
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 1.1e-99 367.9 424 44.8
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 1.4e-99 367.5 446 45.3
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 2.4e-99 366.7 453 45.9
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 5.4e-99 365.5 450 44.4
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 7.0e-99 365.2 428 46.0
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 1.6e-98 364.0 434 45.2
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 7.7e-98 361.7 438 44.7
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 1.0e-97 361.3 516 41.7
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 1.1e-96 357.8 454 42.7
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 1.1e-96 357.8 453 42.2
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 4.2e-96 355.9 429 43.8
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 9.5e-96 354.8 444 43.9
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 9.5e-96 354.8 451 45.0
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 1.2e-95 354.4 447 44.3
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 1.6e-95 354.0 445 43.6
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 2.1e-95 353.6 449 44.1
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 2.8e-95 353.2 425 45.4
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 1.4e-94 350.9 445 44.0
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 1.8e-94 350.5 444 43.5
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 3.0e-94 349.7 445 43.6
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 4.0e-94 349.4 440 44.5
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 9.8e-93 344.7 442 43.4
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 6.3e-92 342.0 438 43.6
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 6.3e-92 342.0 425 43.8
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 2.7e-90 336.7 425 45.2
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 1.7e-89 334.0 452 43.4
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 1.5e-88 330.9 271 55.7
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 2.5e-88 330.1 478 40.2
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 1.6e-87 327.4 424 41.7
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.8e-86 323.9 405 44.4
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 5.2e-86 322.4 438 42.5
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 1.5e-85 320.9 429 44.5
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 2.0e-85 320.5 421 43.5
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 2.9e-84 316.6 437 39.4
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 1.2e-82 311.2 421 41.1
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 1.2e-82 311.2 421 41.1
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 1.1e-80 304.7 437 40.5
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 1.9e-80 303.9 429 40.3
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 2.5e-80 303.5 421 40.1
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 4.3e-80 302.8 424 40.1
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 7.3e-80 302.0 448 40.0
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 7.3e-80 302.0 421 39.9
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 9.5e-80 301.6 621 34.0
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 4.7e-79 299.3 424 39.9
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 6.2e-79 298.9 422 40.8
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 6.2e-79 298.9 422 41.2
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 1.8e-78 297.4 622 33.6
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 2.6e-77 293.5 424 39.4
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 4.4e-77 292.7 422 41.2
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 5.8e-77 292.4 424 39.9
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 2.2e-76 290.4 422 41.9
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 2.1e-74 283.9 303 47.9
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 8.6e-73 278.5 431 38.3
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 1.8e-70 270.8 424 38.4
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 1.6e-66 257.7 449 37.4
Lalb_Chr13g0296311 Lupinus albus HOM05D006162 ORTHO05D007627 1.6e-66 257.7 229 51.1
Lj1g0027635 Lotus japonicus HOM05D006162 ORTHO05D007627 1.0e-65 255.0 273 46.9
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 1.1e-64 251.5 446 37.9
Lj1g0016947 Lotus japonicus HOM05D006162 ORTHO05D007627 5.6e-64 249.2 259 48.6
Atru.chr4.714 Acer truncatum HOM05D006162 ORTHO05D007627 6.2e-63 245.7 224 52.2
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 8.1e-63 245.4 418 36.6
Cpa.g.sc72.50 Carica papaya HOM05D006162 ORTHO05D007627 4.9e-60 236.1 226 50.0
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.4e-54 218.0 422 34.8
DCAR_011465 Daucus carota HOM05D006162 ORTHO05D007627 6.9e-54 215.7 277 41.2
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 2.6e-53 213.8 563 29.0
vmacro18056 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 1.9e-48 197.6 235 45.1
Hma1.2p1_1688F.1_g297590 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 3.6e-47 193.4 178 52.8
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 2.4e-46 190.7 284 39.8
Pp3c18_18540 Physcomitrium patens HOM05D006162 ORTHO05D007627 7.1e-43 179.1 585 28.4
vmacro18055 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 1.9e-40 171.0 261 41.8
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 7.4e-40 169.1 263 39.9
Atru.chr4.715 Acer truncatum HOM05D006162 ORTHO05D007627 4.5e-37 159.8 227 43.2
Mapoly0008s0182 Marchantia polymorpha HOM05D006162 ORTHO05D007627 4.3e-32 143.3 314 28.7
CBR_g28670 Chara braunii HOM05D006162 ORTHO05D007627 2.3e-25 120.9 294 28.9
AagrBONN_evm.TU.Sc2ySwM_368.1435 Anthoceros agrestis HOM05D006162 ORTHO05D007627 1.1e-24 118.6 274 29.9
Lalb_Chr13g0296301 Lupinus albus HOM05D006162 ORTHO05D007627 1.3e-23 115.2 217 35.9
Cpa.g.sc72.51 Carica papaya HOM05D006162 ORTHO05D000563 2.6e-21 107.5 199 38.2
CARHR247340 Cardamine hirsuta HOM05D006162 ORTHO05D007627 5.5e-19 99.8 129 45.0
Nn5g27122 Nelumbo nucifera HOM05D006162 ORTHO05D007627 3.3e-16 90.5 80 60.0
Hma1.2p1_0220F.1_g092950 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 5.7e-16 89.7 72 55.6
arahy.Tifrunner.gnm1.ann1.NX5YGM Arachis hypogaea HOM05D006162 ORTHO05D007627 1.7e-15 88.2 103 46.6
Lj1g0005085 Lotus japonicus HOM05D006162 ORTHO05D007627 4.1e-14 83.6 71 53.5
arahy.Tifrunner.gnm1.ann1.RXB70W Arachis hypogaea HOM05D005572 ORTHO05D007627 4.5e-13 80.1 150 33.3
DCAR_011464 Daucus carota HOM05D006162 ORTHO05D007627 1.3e-12 78.6 80 55.0
arahy.Tifrunner.gnm1.ann1.PN8NU7 Arachis hypogaea HOM05D006162 ORTHO05D007627 5.5e-11 73.2 70 50.0
arahy.Tifrunner.gnm1.ann1.1RFJ6T Arachis hypogaea HOM05D005572 ORTHO05D007627 7.9e-10 69.3 59 55.9
Zm00001eb159190 Zea mays HOM05D006162 ORTHO05D007627 1.8e-09 68.2 77 50.6
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 1.5e-08 65.1 212 28.3
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 2.6e-08 64.3 205 27.3
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 3.3e-08 63.9 140 35.0
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 4.4e-08 63.5 97 40.2
Peaxi162Scf00423g00315 Petunia axillaris HOM05D003912 ORTHO05D004409 9.7e-08 62.4 157 31.2
PRCOL_00006193 Prasinoderma coloniale HOM05D000344 ORTHO05D000934 9.7e-08 62.4 221 25.8
Lj6C552G3 Lonicera japonica HOM05D003912 ORTHO05D004409 1.7e-07 61.6 77 44.2
FAN12G1567 Fragaria x ananassa HOM05D003912 ORTHO05D004409 3.7e-07 60.5 124 32.3
FAN07G1879 Fragaria x ananassa HOM05D003912 ORTHO05D004409 4.8e-07 60.1 124 32.3
TAR636G0234 Trochodendron aralioides HOM05D003912 ORTHO05D004409 6.3e-07 59.7 76 44.7
Cc03_g07890 Coffea canephora HOM05D003912 ORTHO05D004409 8.2e-07 59.3 77 41.6
Pp3c19_20640 Physcomitrium patens HOM05D003912 ORTHO05D004409 8.2e-07 59.3 165 30.9
FvH4_4g16490 Fragaria vesca HOM05D003912 ORTHO05D004409 1.1e-06 58.9 124 32.3
Zm00001eb102350 Zea mays HOM05D003912 ORTHO05D004409 1.1e-06 58.9 205 25.9
FAN17G2369 Fragaria x ananassa HOM05D003912 ORTHO05D004409 1.4e-06 58.5 127 31.5
FAN22G2235 Fragaria x ananassa HOM05D003912 ORTHO05D004409 2.4e-06 57.8 124 31.5
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 2.4e-06 57.8 77 39.0
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 2.4e-06 57.8 75 38.7
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 3.1e-06 57.4 77 40.3
Os08g0527100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 3.1e-06 57.4 77 41.6
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 3.1e-06 57.4 76 44.7
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 4.1e-06 57.0 124 32.3
Ciclev10004226m.g Citrus clementina HOM05D003912 ORTHO05D004409 5.3e-06 56.6 205 25.4
TWI73G0783 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 5.3e-06 56.6 76 40.8
ATR0609G080 Amborella trichopoda HOM05D003912 ORTHO05D004409 7.0e-06 56.2 80 43.8
Pp3c22_11200 Physcomitrium patens HOM05D003912 ORTHO05D004409 7.0e-06 56.2 72 44.4
SGA_v2.0_scaffold626G53246 Striga asiatica HOM05D003912 ORTHO05D004409 7.0e-06 56.2 74 40.5
Atru.chr4.1690 Acer truncatum HOM05D003912 ORTHO05D004409 9.1e-06 55.8 77 39.0
Glyma.11G256600 Glycine max HOM05D003912 ORTHO05D004409 9.1e-06 55.8 76 36.8
Gohir.D02G124000 Gossypium hirsutum HOM05D003912 ORTHO05D004409 9.1e-06 55.8 77 42.9
Gorai.005G130100 Gossypium raimondii HOM05D003912 ORTHO05D004409 9.1e-06 55.8 77 42.9
Lj6g0024996 Lotus japonicus HOM05D003912 ORTHO05D004409 9.1e-06 55.8 77 37.7


User provided reference genes

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