Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0004080 Simmondsia chinensis HOM05D006162 ORTHO05D007627 2.5e-113 412.1 211 100.0
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 8.5e-29 131.3 145 54.5
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 2.1e-27 126.7 142 51.4
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.0e-26 124.4 145 52.4
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 3.9e-26 122.5 167 45.5
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 5.7e-25 118.6 140 51.4
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.8e-23 113.6 140 51.4
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 7.0e-23 111.7 137 50.4
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 1.2e-22 110.9 138 48.6
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 1.5e-22 110.5 136 47.1
vmacro18056 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 2.0e-22 110.2 140 48.6
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 2.6e-22 109.8 164 45.7
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 7.7e-22 108.2 161 40.4
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 2.2e-21 106.7 140 45.0
Cpa.g.sc72.50 Carica papaya HOM05D006162 ORTHO05D007627 3.8e-21 105.9 121 47.1
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 5.0e-21 105.5 140 44.3
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 8.5e-21 104.8 107 56.1
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 2.7e-19 99.8 147 44.9
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 8.0e-19 98.2 153 39.2
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 8.0e-19 98.2 153 39.2
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 1.0e-18 97.8 140 42.9
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 1.0e-18 97.8 156 40.4
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 1.4e-18 97.4 142 45.1
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 1.4e-18 97.4 138 42.8
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 1.4e-18 97.4 132 43.9
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 1.8e-18 97.1 126 42.9
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 3.0e-18 96.3 153 38.6
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 4.0e-18 95.9 121 43.0
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 5.2e-18 95.5 138 42.8
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 5.2e-18 95.5 145 45.5
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 6.7e-18 95.1 127 44.1
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 8.8e-18 94.7 138 40.6
CARHR247340 Cardamine hirsuta HOM05D006162 ORTHO05D007627 2.0e-17 93.6 137 40.1
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 2.6e-17 93.2 146 43.8
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 2.6e-17 93.2 136 42.6
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 2.6e-17 93.2 117 45.3
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 3.3e-17 92.8 138 41.3
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 4.4e-17 92.4 153 39.2
Lalb_Chr13g0296311 Lupinus albus HOM05D006162 ORTHO05D007627 5.7e-17 92.0 118 45.8
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 9.7e-17 91.3 123 42.3
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 9.7e-17 91.3 123 42.3
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 1.7e-16 90.5 139 41.7
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 2.2e-16 90.1 120 42.5
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 2.8e-16 89.7 126 41.3
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 3.7e-16 89.4 135 41.5
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 3.7e-16 89.4 105 47.6
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 3.7e-16 89.4 118 43.2
DCAR_011465 Daucus carota HOM05D006162 ORTHO05D007627 8.2e-16 88.2 110 46.4
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 1.4e-15 87.4 118 46.6
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 1.4e-15 87.4 106 46.2
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.4e-15 87.4 136 41.2
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 1.8e-15 87.0 143 43.4
Hma1.2p1_0220F.1_g092940 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 2.4e-15 86.7 145 39.3
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 5.3e-15 85.5 105 50.5
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 7.0e-15 85.1 117 41.0
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 1.2e-14 84.3 114 46.5
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 1.6e-14 84.0 130 40.0
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 2.0e-14 83.6 126 41.3
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 2.0e-14 83.6 126 41.3
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 2.0e-14 83.6 105 45.7
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 2.6e-14 83.2 103 46.6
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 3.5e-14 82.8 122 41.0
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 7.7e-14 81.6 136 40.4
Peaxi162Scf00025g03225 Petunia axillaris HOM05D006162 ORTHO05D007627 1.0e-13 81.3 108 42.6
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 2.2e-13 80.1 114 42.1
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 5.0e-13 79.0 94 46.8
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 5.0e-13 79.0 107 46.7
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 1.1e-12 77.8 138 42.0
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 1.9e-12 77.0 77 51.9
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 2.5e-12 76.6 108 44.4
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 2.5e-12 76.6 135 40.7
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 4.2e-12 75.9 135 37.8
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 9.4e-12 74.7 102 45.1
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 9.4e-12 74.7 103 48.5
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 1.6e-11 73.9 114 38.6
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 2.7e-11 73.2 135 37.0
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 2.7e-11 73.2 113 39.8
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 3.6e-11 72.8 100 47.0
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 3.6e-11 72.8 121 36.4
Solyc04g051400.2 Solanum lycopersicum HOM05D006162 ORTHO05D007627 6.1e-11 72.0 102 48.0
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 8.0e-11 71.6 100 44.0
Atru.chr4.714 Acer truncatum HOM05D006162 ORTHO05D007627 5.2e-10 68.9 109 41.3
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 5.2e-10 68.9 117 35.0
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 6.8e-10 68.6 110 44.5
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 1.2e-09 67.8 108 41.7
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 1.5e-09 67.4 68 50.0
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 2.6e-09 66.6 77 44.2
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 5.7e-09 65.5 117 38.5
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 9.8e-09 64.7 137 35.8
Zm00001eb159190 Zea mays HOM05D006162 ORTHO05D007627 2.8e-08 63.2 99 39.4
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 1.8e-07 60.5 67 46.3
Os04g0429200 Oryza sativa ssp. japonica HOM05D006162 ORTHO05D007627 4.1e-07 59.3 114 39.5
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 4.1e-07 59.3 102 38.2
Mapoly0008s0182 Marchantia polymorpha HOM05D006162 ORTHO05D007627 9.1e-07 58.2 107 37.4


User provided reference genes

Program Settings