Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 2.0e-240 835.5 454 100.0
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 9.6e-179 630.6 456 76.3
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 1.8e-172 609.8 452 74.6
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 1.9e-171 606.3 453 74.6
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 1.5e-168 596.7 453 73.1
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 4.5e-168 595.1 458 73.4
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 1.3e-167 593.6 454 67.8
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 1.7e-167 593.2 466 72.3
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.9e-167 592.4 458 73.4
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 3.8e-167 592.0 454 72.0
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 6.4e-167 591.3 461 72.7
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 1.9e-166 589.7 454 71.8
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 5.5e-166 588.2 459 66.0
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 9.3e-166 587.4 459 65.8
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 9.3e-166 587.4 454 71.4
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 1.6e-165 586.6 461 66.8
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 2.1e-165 586.3 459 70.8
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 2.7e-165 585.9 453 73.3
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 4.6e-165 585.1 466 68.5
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 1.0e-164 583.9 454 71.4
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 1.3e-164 583.6 455 65.3
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.8e-164 583.2 477 64.6
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 2.3e-164 582.8 497 68.6
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 8.7e-164 580.9 415 77.3
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 3.3e-163 578.9 441 68.3
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 3.3e-163 578.9 455 71.9
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 2.1e-162 576.2 452 64.8
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 3.1e-161 572.4 460 64.8
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 4.0e-161 572.0 484 66.7
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 9.0e-161 570.9 474 71.5
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 2.6e-160 569.3 462 71.4
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.0e-159 567.4 453 71.3
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 3.8e-159 565.5 475 62.3
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.1e-158 563.9 463 68.7
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 3.5e-157 558.9 465 62.2
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 4.6e-157 558.5 460 70.9
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 6.0e-157 558.1 488 67.0
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 6.0e-157 558.1 453 69.8
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 7.9e-157 557.8 468 60.5
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 1.3e-156 557.0 453 70.0
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 2.3e-156 556.2 462 69.0
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 5.1e-156 555.1 482 65.1
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 5.1e-156 555.1 488 66.6
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 6.7e-156 554.7 390 78.2
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 8.7e-156 554.3 487 58.1
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 8.7e-156 554.3 487 58.1
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 1.9e-155 553.1 482 66.6
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 2.5e-155 552.7 456 62.1
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 2.5e-155 552.7 466 60.3
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 3.3e-155 552.4 486 58.0
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 4.3e-155 552.0 456 68.4
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 5.7e-155 551.6 459 69.3
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 7.4e-155 551.2 529 55.4
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 6.3e-154 548.1 500 58.4
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 1.4e-153 547.0 468 61.8
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 4.1e-153 545.4 494 57.1
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 9.0e-153 544.3 479 66.2
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 1.5e-152 543.5 463 62.0
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 2.0e-152 543.1 484 58.3
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 3.4e-152 542.3 495 64.8
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 5.9e-152 541.6 486 60.1
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 1.2e-149 533.9 404 66.8
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 2.7e-149 532.7 504 57.5
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 5.1e-148 528.5 381 65.9
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 2.5e-147 526.2 453 68.2
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 1.1e-145 520.8 546 57.1
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 5.5e-142 508.4 452 58.8
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.2e-141 507.3 414 62.8
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 4.7e-141 505.4 486 60.1
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 2.3e-140 503.1 404 61.9
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 5.1e-140 501.9 425 60.2
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 5.1e-140 501.9 482 54.6
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 3.7e-138 495.7 487 60.4
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.4e-137 493.8 484 62.2
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 4.1e-137 492.3 453 65.3
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 5.3e-137 491.9 454 57.0
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 6.9e-137 491.5 507 53.1
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 1.3e-135 487.3 405 61.2
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.2e-133 480.7 387 62.8
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 2.7e-133 479.6 434 58.1
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 2.7e-133 479.6 416 67.3
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 2.3e-132 476.5 465 56.3
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 3.0e-132 476.1 427 58.1
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 7.4e-131 471.5 472 54.4
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 1.7e-130 470.3 511 50.9
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 6.3e-130 468.4 416 58.4
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 9.1e-129 464.5 485 60.0
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.2e-128 464.2 458 61.1
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 4.5e-128 462.2 486 50.8
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 1.7e-127 460.3 416 64.7
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 1.9e-126 456.8 443 56.0
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 3.2e-126 456.1 452 55.5
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 4.2e-126 455.7 329 78.1
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 2.1e-125 453.4 383 58.7
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 9.1e-121 438.0 385 57.7
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 5.0e-119 432.2 405 56.0
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 1.5e-118 430.6 374 58.8
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 3.2e-118 429.5 448 53.1
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 4.0e-116 422.5 466 56.0
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 4.4e-115 419.1 416 62.0
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 7.5e-115 418.3 412 62.4
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 6.8e-108 395.2 416 59.1
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 2.0e-107 393.7 454 55.5
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 1.8e-105 387.1 318 63.8
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 1.8e-105 387.1 454 50.0
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 3.5e-104 382.9 388 56.7
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 1.3e-95 354.4 283 62.2
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 4.7e-93 345.9 412 44.9
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 3.1e-92 343.2 493 46.5
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 3.4e-75 286.6 434 39.9
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 2.5e-70 270.4 250 67.6
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 2.8e-69 266.9 298 48.3
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 3.9e-63 246.5 248 54.0
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 6.6e-63 245.7 205 60.0
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 1.8e-60 237.7 206 60.7
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.3e-60 236.1 468 41.2
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 5.3e-60 236.1 468 41.2
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 9.9e-59 231.9 211 59.2
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 1.9e-57 227.6 523 32.1
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 1.6e-48 198.0 135 70.4
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 1.0e-47 195.3 176 58.5
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 5.1e-47 193.0 245 46.1
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 6.2e-45 186.0 109 79.8
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 1.9e-41 174.5 465 28.4
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 5.5e-41 172.9 204 49.5
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 1.5e-38 164.9 146 58.9
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 3.1e-36 157.1 131 60.3
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 2.8e-29 134.0 75 80.0
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.4e-28 131.7 81 72.8
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 1.4e-28 131.7 114 62.3
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 5.3e-28 129.8 76 76.3
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 5.0e-26 123.2 108 58.3
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 1.9e-25 121.3 230 32.6
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 5.7e-22 109.8 67 74.6
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 6.3e-21 106.3 375 23.7
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.5e-19 101.7 84 58.3
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 2.5e-17 94.4 463 23.3
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 7.4e-14 82.8 386 23.1
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 9.7e-14 82.4 39 84.6
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 1.7e-13 81.6 395 23.5
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 1.7e-13 81.6 395 23.5
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 7.0e-12 76.3 231 28.6
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 9.1e-12 75.9 398 22.6
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 9.1e-12 75.9 398 22.6
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 2.6e-11 74.3 55 61.8
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 2.2e-10 71.2 53 60.4
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 2.2e-10 71.2 323 24.1
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 5.0e-10 70.1 328 23.8
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 3.2e-09 67.4 404 21.8
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 5.5e-09 66.6 327 24.2
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 7.2e-09 66.2 308 24.4
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 9.4e-09 65.9 305 23.9
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 9.4e-09 65.9 46 63.0
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 1.2e-08 65.5 333 23.4
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 1.2e-08 65.5 322 24.2
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 1.2e-08 65.5 411 21.9
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 6.1e-08 63.2 445 20.9
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 5.2e-07 60.1 64 45.3
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 5.2e-07 60.1 480 20.8
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 2.6e-06 57.8 394 20.3
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 5.7e-06 56.6 476 21.2


User provided reference genes

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