Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0002980 Simmondsia chinensis HOM05D027876 ORTHO05D388469 2.1e-109 399.1 206 100.0
Sc06g0004940 Simmondsia chinensis HOM05D027876 ORTHO05D388026 2.3e-10 70.1 121 40.5
Sc23g0002050 Simmondsia chinensis HOM05D001007 ORTHO05D006705 1.1e-09 67.8 39 84.6
AUR62001703 Chenopodium quinoa HOM05D001007 ORTHO05D006705 2.5e-09 66.6 36 83.3
EL10Ac7g16109 Beta vulgaris HOM05D001007 ORTHO05D006705 3.3e-09 66.2 36 83.3
CSS0032887 Camellia sinensis var. sinensis HOM05D001007 ORTHO05D006705 4.3e-09 65.9 36 83.3
Lj2A1128G41 Lonicera japonica HOM05D001007 ORTHO05D006705 7.3e-09 65.1 36 83.3
Sc12g0000990 Simmondsia chinensis HOM05D001007 ORTHO05D006705 9.5e-09 64.7 35 82.9
Ah.08g220450 Amaranthus hybridus HOM05D001007 ORTHO05D006705 1.2e-08 64.3 35 82.9
Potri.009G041200 Populus trichocarpa HOM05D001007 ORTHO05D006705 2.8e-08 63.2 48 68.8
Sabra09G0029000 Salix brachista HOM05D001007 ORTHO05D006705 6.2e-08 62.0 48 66.7
Haze_24239 Corylus avellana HOM05D001007 ORTHO05D006705 8.1e-08 61.6 36 77.8
DCAR_015644 Daucus carota HOM05D001007 ORTHO05D006705 8.1e-08 61.6 34 82.4
arahy.Tifrunner.gnm1.ann1.MGB2DA Arachis hypogaea HOM05D001007 ORTHO05D006705 1.1e-07 61.2 124 35.5
CAN.G538.2 Capsicum annuum HOM05D001007 ORTHO05D006705 1.1e-07 61.2 56 60.7
Sc26g0002510 Simmondsia chinensis HOM05D027876 ORTHO05D388756 1.1e-07 61.2 94 41.5
arahy.Tifrunner.gnm1.ann1.SSF8HC Arachis hypogaea HOM05D001007 ORTHO05D006705 1.4e-07 60.8 124 34.7
MELO3C020571.2 Cucumis melo HOM05D001007 ORTHO05D006705 4.0e-07 59.3 116 37.1
CsaV3_1G035960 Cucumis sativus L. HOM05D001007 ORTHO05D006705 4.0e-07 59.3 116 37.1
Duzib170G0956 Durio zibethinus HOM05D001007 ORTHO05D006705 4.0e-07 59.3 37 73.0
Actinidia25132 Actinidia chinensis HOM05D001007 ORTHO05D006705 5.2e-07 58.9 35 80.0
COL.COLO4_19087 Corchorus olitorius HOM05D001007 ORTHO05D006705 6.8e-07 58.5 127 33.1
Nitab4.5_0000880g0030 Nicotiana tabacum HOM05D001007 ORTHO05D006705 6.8e-07 58.5 57 56.1
Sc10g0006990 Simmondsia chinensis HOM05D027876 ORTHO05D388534 6.8e-07 58.5 70 52.9
Cpa.g.sc112.71 Carica papaya HOM05D001007 ORTHO05D006705 8.9e-07 58.2 35 74.3
Cfa011634 Carpinus fangiana HOM05D001007 ORTHO05D006705 8.9e-07 58.2 36 75.0
Nitab4.5_0002405g0030 Nicotiana tabacum HOM05D001007 ORTHO05D006705 8.9e-07 58.2 55 58.2
vmacro02999 Vaccinium macrocarpon HOM05D001007 ORTHO05D006705 8.9e-07 58.2 35 77.1
Cc01_g13740 Coffea canephora HOM05D001007 ORTHO05D006705 1.2e-06 57.8 36 72.2
Glyma.18G067400 Glycine max HOM05D001007 ORTHO05D006705 1.2e-06 57.8 34 73.5
Phvul.006G063900 Phaseolus vulgaris HOM05D001007 ORTHO05D006705 1.2e-06 57.8 123 35.0
TWI79G0297 Tripterygium wilfordii HOM05D001007 ORTHO05D006705 1.2e-06 57.8 36 72.2
Atru.chr3.4061 Acer truncatum HOM05D001007 ORTHO05D006705 1.5e-06 57.4 35 74.3
MSTRG.18565 Avicennia marina HOM05D001007 ORTHO05D006705 1.5e-06 57.4 36 72.2
Gohir.A03G048400 Gossypium hirsutum HOM05D001007 ORTHO05D006705 1.5e-06 57.4 36 72.2
Gohir.D03G118700 Gossypium hirsutum HOM05D001007 ORTHO05D006705 1.5e-06 57.4 36 72.2
Hma1.2p1_0227F.1_g096160 Hydrangea macrophylla HOM05D001007 ORTHO05D006705 1.5e-06 57.4 35 77.1
Nn2g11355 Nelumbo nucifera HOM05D001007 ORTHO05D006705 1.5e-06 57.4 35 65.7
Thecc.09G307300 Theobroma cacao HOM05D001007 ORTHO05D006705 1.5e-06 57.4 36 72.2
Gorai.003G125100 Gossypium raimondii HOM05D001007 ORTHO05D006705 2.0e-06 57.0 36 72.2
Lsat_1_v5_gn_4_65480 Lactuca sativa HOM05D001007 ORTHO05D006705 2.0e-06 57.0 36 69.4
Solyc06g005990.4 Solanum lycopersicum HOM05D001007 ORTHO05D006705 2.0e-06 57.0 56 55.4
Sopen06g001970 Solanum pennellii HOM05D001007 ORTHO05D006705 2.0e-06 57.0 56 55.4
Peaxi162Scf00842g00018 Petunia axillaris HOM05D001007 ORTHO05D006705 2.6e-06 56.6 55 56.4
Sed0027946 Sechium edule HOM05D001007 ORTHO05D006705 2.6e-06 56.6 35 74.3
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.6e-06 56.6 100 42.0
VMungo0540G2128 Vigna mungo HOM05D001007 ORTHO05D006705 2.6e-06 56.6 123 35.0
GSVIVG01024808001 Vitis vinifera HOM05D001007 ORTHO05D006705 2.6e-06 56.6 34 73.5
ClCG03G000980 Citrullus lanatus HOM05D001007 ORTHO05D006705 3.4e-06 56.2 56 57.1
Manes.01G165300 Manihot esculenta HOM05D001007 ORTHO05D006705 3.4e-06 56.2 36 69.4
Psat5g162480 Pisum sativum HOM05D001007 ORTHO05D006705 5.8e-06 55.5 35 68.6
QL01p027375 Quercus lobata HOM05D001007 ORTHO05D006705 5.8e-06 55.5 35 68.6
Ca_14897_v3 Cicer arietinum L. HOM05D001007 ORTHO05D006705 7.5e-06 55.1 35 68.6
FvH4_3g37880 Fragaria vesca HOM05D001007 ORTHO05D006705 7.5e-06 55.1 36 72.2
FAN11G3969 Fragaria x ananassa HOM05D001007 ORTHO05D006705 7.5e-06 55.1 36 72.2
FAN21G1509 Fragaria x ananassa HOM05D001007 ORTHO05D006705 7.5e-06 55.1 36 72.2
FAN25G0707 Fragaria x ananassa HOM05D001007 ORTHO05D006705 7.5e-06 55.1 36 72.2
MD03G1077900 Malus domestica HOM05D001007 ORTHO05D006705 7.5e-06 55.1 35 71.4
Medtr3g462290 Medicago truncatula HOM05D001007 ORTHO05D006705 7.5e-06 55.1 35 71.4
Prupe.6G062900 Prunus persica HOM05D001007 ORTHO05D006705 7.5e-06 55.1 175 30.3
Rhsim13G0073900 Rhododendron simsii HOM05D001007 ORTHO05D006705 7.5e-06 55.1 35 71.4
Eucgr.B02279 Eucalyptus grandis HOM05D001007 ORTHO05D006705 9.9e-06 54.7 55 58.2
RcHm_v2.0_Chr5g0068091 Rosa chinensis HOM05D001007 ORTHO05D006705 9.9e-06 54.7 35 74.3


User provided reference genes

Program Settings