Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0009070 Simmondsia chinensis HOM05D006443 ORTHO05D007797 2.9e-229 798.1 384 100.0
Hund06091 Selenicereus undatus HOM05D006443 ORTHO05D007797 4.5e-153 545.0 357 74.5
COL.COLO4_20406 Corchorus olitorius HOM05D006443 ORTHO05D007797 1.0e-152 543.9 362 72.7
Duzib248G1079 Durio zibethinus HOM05D006443 ORTHO05D007797 3.2e-151 538.9 363 71.9
Haze_12422 Corylus avellana HOM05D006443 ORTHO05D007797 4.2e-151 538.5 363 71.3
QL03p052624 Quercus lobata HOM05D006443 ORTHO05D007797 4.2e-151 538.5 362 71.5
Cfa009372 Carpinus fangiana HOM05D006443 ORTHO05D007797 2.7e-150 535.8 363 71.9
Gohir.D04G182900 Gossypium hirsutum HOM05D006443 ORTHO05D007797 7.9e-150 534.3 362 71.3
Thecc.02G208000 Theobroma cacao HOM05D006443 ORTHO05D007797 1.3e-149 533.5 363 71.6
Actinidia30647 Actinidia chinensis HOM05D006443 ORTHO05D007797 2.3e-149 532.7 362 72.4
Gorai.012G175900 Gossypium raimondii HOM05D006443 ORTHO05D007797 2.3e-149 532.7 362 71.3
GSVIVG01010487001 Vitis vinifera HOM05D006443 ORTHO05D007797 2.3e-149 532.7 362 71.5
CiPaw.05G109500 Carya illinoinensis HOM05D006443 ORTHO05D007797 3.9e-149 531.9 363 71.1
Gohir.A04G139700 Gossypium hirsutum HOM05D006443 ORTHO05D007797 1.9e-148 529.6 362 70.7
Potri.003G171900 Populus trichocarpa HOM05D006443 ORTHO05D007797 2.5e-148 529.3 361 71.5
Atru.chr11.2327 Acer truncatum HOM05D006443 ORTHO05D007797 5.7e-148 528.1 365 70.4
Hma1.2p1_0065F.1_g035440 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 7.4e-148 527.7 360 72.5
Ciclev10031911m.g Citrus clementina HOM05D006443 ORTHO05D007797 1.3e-147 526.9 363 70.5
TWI36G0197 Tripterygium wilfordii HOM05D006443 ORTHO05D007797 8.2e-147 524.2 363 69.1
CSS0008831 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.2e-145 520.4 364 69.8
CSS0026603 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.2e-145 520.4 364 69.8
Sabra03G0125800 Salix brachista HOM05D006443 ORTHO05D007797 1.5e-145 520.0 361 70.1
FvH4_4g23730 Fragaria vesca HOM05D006443 ORTHO05D007797 3.4e-145 518.8 359 70.5
AUR62005622 Chenopodium quinoa HOM05D006443 ORTHO05D007797 4.5e-145 518.5 356 71.1
RcHm_v2.0_Chr4g0430211 Rosa chinensis HOM05D006443 ORTHO05D007797 5.9e-145 518.1 359 71.3
MD13G1119500 Malus domestica HOM05D006443 ORTHO05D007797 1.3e-144 516.9 361 70.6
Cpa.g.sc43.60 Carica papaya HOM05D006443 ORTHO05D007797 1.7e-144 516.5 360 69.7
PGR119G0512 Punica granatum HOM05D006443 ORTHO05D007797 1.4e-143 513.5 361 70.6
Nn4g22309 Nelumbo nucifera HOM05D006443 ORTHO05D007797 2.5e-143 512.7 368 66.8
Eucgr.H04637 Eucalyptus grandis HOM05D006443 ORTHO05D007797 7.2e-143 511.1 359 70.5
FAN07G1264 Fragaria x ananassa HOM05D006443 ORTHO05D007797 2.1e-142 509.6 359 69.1
MELO3C011863.2 Cucumis melo HOM05D006443 ORTHO05D007797 2.7e-142 509.2 365 69.9
FAN22G2300 Fragaria x ananassa HOM05D006443 ORTHO05D007797 6.1e-142 508.1 359 69.1
CANSAT01G1158 Cannabis sativa HOM05D006443 ORTHO05D007797 2.3e-141 506.1 357 68.9
Glyma.18G006200 Glycine max HOM05D006443 ORTHO05D007797 3.3e-140 502.3 365 68.8
VMungo1383G0397 Vigna mungo HOM05D006443 ORTHO05D007797 3.3e-140 502.3 362 68.5
Glyma.11G250800 Glycine max HOM05D006443 ORTHO05D007797 5.7e-140 501.5 365 68.2
THA.LOC104807130 Tarenaya hassleriana HOM05D006443 ORTHO05D007797 9.7e-140 500.7 364 67.9
Migut.K00736 Erythranthe guttata HOM05D006443 ORTHO05D007797 2.2e-139 499.6 356 68.3
FAN17G1989 Fragaria x ananassa HOM05D006443 ORTHO05D007797 8.2e-139 497.7 447 58.6
Prupe.1G225500 Prunus persica HOM05D006443 ORTHO05D007797 1.4e-138 496.9 361 69.0
HanXRQChr08g0207841 Helianthus annuus HOM05D006443 ORTHO05D007797 2.4e-138 496.1 361 68.4
Phvul.001G262100 Phaseolus vulgaris HOM05D006443 ORTHO05D007797 4.1e-138 495.4 365 67.1
MBI11_g05329_MAGBIO Magnolia biondii HOM05D006443 ORTHO05D007797 3.4e-137 492.3 358 67.9
Cc11_g16930 Coffea canephora HOM05D006443 ORTHO05D007797 7.7e-137 491.1 360 67.8
Sp1g10410 Schrenkiella parvula HOM05D006443 ORTHO05D007797 1.0e-136 490.7 360 67.2
Ca_16457_v3 Cicer arietinum L. HOM05D006443 ORTHO05D007797 2.2e-136 489.6 362 68.0
Nitab4.5_0008905g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 2.2e-136 489.6 358 64.2
Peaxi162Scf00359g00713 Petunia axillaris HOM05D006443 ORTHO05D007797 2.9e-136 489.2 363 65.8
MSTRG.502 Avicennia marina HOM05D006443 ORTHO05D007797 3.8e-136 488.8 352 67.3
PSO017G6191 Papaver somniferum HOM05D006443 ORTHO05D007797 5.0e-136 488.4 366 66.1
arahy.Tifrunner.gnm1.ann1.P16M7J Arachis hypogaea HOM05D006443 ORTHO05D007797 6.5e-136 488.0 361 68.7
Carub.0001s1145 Capsella rubella HOM05D006443 ORTHO05D007797 6.5e-136 488.0 359 68.0
arahy.Tifrunner.gnm1.ann1.DXN1WG Arachis hypogaea HOM05D006443 ORTHO05D007797 8.5e-136 487.6 361 67.9
PSO478G2155 Papaver somniferum HOM05D006443 ORTHO05D007797 1.9e-135 486.5 366 66.1
Solyc04g045590.3 Solanum lycopersicum HOM05D006443 ORTHO05D007797 1.9e-135 486.5 359 64.6
Sopen04g017520 Solanum pennellii HOM05D006443 ORTHO05D007797 3.2e-135 485.7 359 64.6
Psat5g096400 Pisum sativum HOM05D006443 ORTHO05D007797 1.2e-134 483.8 362 66.9
Actinidia08069 Actinidia chinensis HOM05D006443 ORTHO05D007797 4.7e-134 481.9 366 67.5
AL1G22970 Arabidopsis lyrata HOM05D006443 ORTHO05D007797 6.1e-134 481.5 361 66.8
Oeu058924.1 Olea europaea HOM05D006443 ORTHO05D007797 6.1e-134 481.5 359 66.3
TPR.G17786 Trifolium pratense HOM05D006443 ORTHO05D007797 7.9e-134 481.1 362 66.9
Medtr3g085290 Medicago truncatula HOM05D006443 ORTHO05D007797 1.0e-133 480.7 366 66.9
Thhalv10008060m.g Eutrema salsugineum HOM05D006443 ORTHO05D007797 1.4e-133 480.3 360 66.4
Lalb_Chr11g0075761 Lupinus albus HOM05D006443 ORTHO05D007797 1.4e-133 480.3 358 66.8
BraA09t41778Z Brassica rapa HOM05D006443 ORTHO05D007797 2.3e-133 479.6 360 66.7
SGA_v2.0_scaffold9G04677 Striga asiatica HOM05D006443 ORTHO05D007797 6.7e-133 478.0 384 62.8
Lj6g0022486 Lotus japonicus HOM05D006443 ORTHO05D007797 8.8e-133 477.6 370 65.4
CARHR012120 Cardamine hirsuta HOM05D006443 ORTHO05D007797 7.4e-132 474.6 358 66.5
Aa31LG1G3790 Aethionema arabicum HOM05D006443 ORTHO05D007797 1.3e-131 473.8 359 65.5
BcaB08g37422 Brassica carinata HOM05D006443 ORTHO05D007797 1.3e-131 473.8 361 65.7
CAN.G237.4 Capsicum annuum HOM05D006443 ORTHO05D007797 1.8e-130 469.9 360 62.8
BolC8t52335H Brassica oleracea HOM05D006443 ORTHO05D007797 3.1e-130 469.2 361 65.1
Aqoxy5G03367 Aquilegia oxysepala HOM05D006443 ORTHO05D007797 9.1e-130 467.6 362 64.9
AT1G11780 Arabidopsis thaliana HOM05D006443 ORTHO05D007797 1.2e-129 467.2 358 64.8
BcaC07g41759 Brassica carinata HOM05D006443 ORTHO05D007797 1.6e-129 466.8 361 64.8
Nitab4.5_0001356g0010 Nicotiana tabacum HOM05D006443 ORTHO05D007797 2.0e-129 466.5 347 62.8
Manes.13G011800 Manihot esculenta HOM05D006443 ORTHO05D007797 4.5e-129 465.3 320 70.0
CDE05G3615 Ceratophyllum demersum HOM05D006443 ORTHO05D007797 1.0e-128 464.2 356 62.9
Lj6C827T5 Lonicera japonica HOM05D006443 ORTHO05D007797 3.8e-128 462.2 404 60.6
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 1.1e-127 460.7 342 67.0
AUR62028926 Chenopodium quinoa HOM05D006443 ORTHO05D007797 1.6e-126 456.8 309 71.5
Lsat_1_v5_gn_4_56020 Lactuca sativa HOM05D006443 ORTHO05D007797 2.3e-125 453.0 394 60.7
ClCG11G013630 Citrullus lanatus HOM05D006443 ORTHO05D007797 3.1e-122 442.6 398 59.5
unitig_747.g21126 Utricularia gibba HOM05D006443 ORTHO05D007797 3.1e-122 442.6 329 66.3
Sed0000233 Sechium edule HOM05D006443 ORTHO05D007797 5.9e-121 438.3 320 68.1
vmacro19384 Vaccinium macrocarpon HOM05D006443 ORTHO05D007797 5.0e-120 435.3 381 60.9
ATR0561G191 Amborella trichopoda HOM05D006443 ORTHO05D007797 5.5e-119 431.8 333 63.4
EL10Ac6g13506 Beta vulgaris HOM05D006443 ORTHO05D007797 5.5e-119 431.8 317 69.1
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 8.8e-117 424.5 303 69.6
C08p47970 Brassica napus HOM05D006443 ORTHO05D007797 8.3e-115 417.9 303 68.0
Zm00001eb169540 Zea mays HOM05D006443 ORTHO05D007797 3.8e-112 409.1 374 59.1
Rhsim12G0099900 Rhododendron simsii HOM05D006443 ORTHO05D007797 8.5e-112 407.9 263 73.8
CsaV3_5G030250 Cucumis sativus L. HOM05D006443 ORTHO05D007797 3.4e-100 369.4 254 72.0
Dinv17565 Davidia involucrata HOM05D006443 ORTHO05D007797 1.5e-95 354.0 269 65.8
SEGI_28427 Sequoiadendron giganteum HOM05D006443 ORTHO05D007797 1.5e-95 354.0 357 54.6
Os11g0488500 Oryza sativa ssp. japonica HOM05D006443 ORTHO05D007797 3.4e-92 342.8 324 57.1
SMO196G0120 Selaginella moellendorffii HOM05D006443 ORTHO05D007797 2.4e-90 336.7 358 52.0
Mapoly0036s0054 Marchantia polymorpha HOM05D006443 ORTHO05D007797 4.3e-87 325.9 415 44.6
TAR629G0791 Trochodendron aralioides HOM05D006443 ORTHO05D007797 1.6e-86 323.9 201 75.1
Pp3c15_20640 Physcomitrium patens HOM05D006443 ORTHO05D007797 1.8e-85 320.5 399 45.9
SalBow2G0214 Salvia bowleyana HOM05D006443 ORTHO05D007797 1.8e-85 320.5 250 64.0
SalBow1G6802 Salvia bowleyana HOM05D006443 ORTHO05D007797 6.8e-85 318.5 250 63.6
AagrBONN_evm.TU.Sc2ySwM_228.5822 Anthoceros agrestis HOM05D006443 ORTHO05D007797 1.5e-84 317.4 359 47.1
CBR_g32330 Chara braunii HOM05D006443 ORTHO05D007797 1.2e-57 228.0 574 29.1
DCAR_031205 Daucus carota HOM05D006443 ORTHO05D007797 3.5e-57 226.5 205 57.6
Hma1.2p1_0065F.1_g035450 Hydrangea macrophylla HOM05D006443 ORTHO05D007797 3.5e-57 226.5 134 80.6
CSS0017614 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 1.5e-55 221.1 126 81.7
CSS0019305 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 4.3e-55 219.5 126 81.7
DCAR_031204 Daucus carota HOM05D006443 ORTHO05D007797 6.4e-51 205.7 122 76.2
ClCG11G013640 Citrullus lanatus HOM05D006443 ORTHO05D007797 1.1e-39 168.3 100 82.0
Cre06.g278198 Chlamydomonas reinhardtii HOM05D006443 ORTHO05D007797 2.8e-38 163.7 245 37.1
C08p48190 Brassica napus HOM05D006443 ORTHO05D007797 6.5e-27 125.9 91 62.6
BolC8t52352H Brassica oleracea HOM05D006443 ORTHO05D007797 2.5e-26 124.0 91 61.5
PRCOL_00005324 Prasinoderma coloniale HOM05D006443 ORTHO05D007797 2.7e-25 120.6 154 42.2
CSS0022605 Camellia sinensis var. sinensis HOM05D006443 ORTHO05D007797 7.9e-25 119.0 97 61.9
MCO14G547 Micromonas commoda HOM05D006443 ORTHO05D007797 2.8e-22 110.5 78 59.0
Cfa001627 Carpinus fangiana HOM05D006443 ORTHO05D007797 1.5e-20 104.8 177 35.0
Rhsim12G0100100 Rhododendron simsii HOM05D006443 ORTHO05D007797 5.0e-19 99.8 100 52.0
FAN12G3107 Fragaria x ananassa HOM05D006443 ORTHO05D007797 7.4e-15 85.9 86 47.7
TAR629G0787 Trochodendron aralioides HOM05D006443 ORTHO05D007797 1.3e-14 85.1 74 56.8
C08p46980 Brassica napus HOM05D006443 ORTHO05D007797 2.0e-12 77.8 54 61.1
BolC8t52235H Brassica oleracea HOM05D006443 ORTHO05D007797 2.0e-12 77.8 54 61.1
CSS0049531 Camellia sinensis var. sinensis HOM05D001731 ORTHO05D000001 3.5e-12 77.0 50 70.0
VMungo0331G2034 Vigna mungo HOM05D003341 ORTHO05D003603 1.7e-11 74.7 163 31.3
Haze_16082 Corylus avellana HOM05D003341 ORTHO05D003603 6.5e-11 72.8 190 28.4
Phvul.001G131400 Phaseolus vulgaris HOM05D003341 ORTHO05D003603 6.5e-11 72.8 154 31.8
COL.COLO4_36103 Corchorus olitorius HOM05D003341 ORTHO05D003603 9.4e-10 68.9 193 27.5
QL05p003212 Quercus lobata HOM05D003341 ORTHO05D003603 1.5e-07 61.6 123 33.3
HanXRQChr09g0276511 Helianthus annuus HOM05D003341 ORTHO05D003603 5.7e-07 59.7 112 30.4
QL05p002051 Quercus lobata HOM05D003341 ORTHO05D003603 5.7e-07 59.7 123 32.5
FAN02G2897 Fragaria x ananassa HOM05D003341 ORTHO05D003603 1.7e-06 58.2 83 37.3
FvH4_6g35240 Fragaria vesca HOM05D003341 ORTHO05D003603 3.7e-06 57.0 83 36.1
FAN09G0950 Fragaria x ananassa HOM05D003341 ORTHO05D003603 3.7e-06 57.0 83 36.1
FAN14G1485 Fragaria x ananassa HOM05D003341 ORTHO05D003603 3.7e-06 57.0 83 36.1


User provided reference genes

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