Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 5.3e-81 304.3 152 100.0
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 9.0e-65 250.4 131 95.4
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 1.0e-47 193.7 124 77.4
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.0e-47 193.7 124 77.4
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 9.4e-46 187.2 124 75.8
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 2.7e-45 185.7 124 72.6
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 2.7e-45 185.7 124 73.4
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 7.9e-45 184.1 119 75.6
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 2.3e-44 182.6 124 73.4
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 3.0e-44 182.2 124 74.2
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 3.9e-44 181.8 121 74.4
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 5.2e-44 181.4 124 74.2
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 8.8e-44 180.6 119 74.8
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.5e-43 179.9 124 72.6
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.5e-43 179.9 125 75.2
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.5e-43 179.9 125 75.2
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 3.3e-43 178.7 124 72.6
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 3.3e-43 178.7 124 72.6
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.3e-42 176.8 110 77.3
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 3.7e-42 175.3 124 71.8
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 6.3e-42 174.5 124 72.6
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 6.3e-42 174.5 125 70.4
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 8.2e-42 174.1 109 79.8
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 8.2e-42 174.1 109 79.8
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.1e-41 173.7 110 76.4
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 3.1e-41 172.2 112 74.1
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 3.1e-41 172.2 124 71.8
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.1e-41 171.8 124 70.2
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 4.1e-41 171.8 110 76.4
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 5.3e-41 171.4 124 70.2
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 5.3e-41 171.4 116 73.3
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 2.6e-40 169.1 121 71.1
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 2.6e-40 169.1 122 68.9
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 3.5e-40 168.7 122 69.7
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 3.5e-40 168.7 109 74.3
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 3.5e-40 168.7 130 67.7
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 3.5e-40 168.7 121 71.9
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 4.5e-40 168.3 129 69.8
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 7.7e-40 167.5 135 66.7
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.0e-39 167.2 124 68.5
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 1.3e-39 166.8 124 70.2
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.3e-39 166.8 116 72.4
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 2.2e-39 166.0 111 74.8
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 2.2e-39 166.0 108 77.8
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 2.2e-39 166.0 119 69.7
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 5.0e-39 164.9 121 68.6
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 6.5e-39 164.5 121 71.1
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 8.5e-39 164.1 116 69.8
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 8.5e-39 164.1 121 66.9
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 1.1e-38 163.7 124 70.2
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.1e-38 163.7 121 67.8
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.1e-38 163.7 125 68.0
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 1.9e-38 162.9 108 75.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 2.5e-38 162.5 116 69.0
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 2.5e-38 162.5 121 66.9
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 4.2e-38 161.8 124 66.9
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 5.5e-38 161.4 124 64.5
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 5.5e-38 161.4 112 70.5
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 7.2e-38 161.0 119 68.9
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.1e-37 159.5 127 63.8
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.1e-37 159.5 127 63.8
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 2.1e-37 159.5 121 66.1
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 2.1e-37 159.5 123 64.2
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 4.7e-37 158.3 121 65.3
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 6.1e-37 157.9 135 62.2
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 6.1e-37 157.9 122 68.0
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.0e-36 157.1 121 65.3
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.0e-36 157.1 121 65.3
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.4e-36 156.8 109 69.7
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 1.4e-36 156.8 121 64.5
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 1.4e-36 156.8 119 65.5
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.4e-36 156.8 121 66.1
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 3.0e-36 155.6 115 64.3
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 3.0e-36 155.6 121 63.6
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 3.0e-36 155.6 115 66.1
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 4.0e-36 155.2 103 74.8
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 5.2e-36 154.8 121 63.6
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 8.8e-36 154.1 97 78.4
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.5e-35 153.3 99 75.8
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 1.5e-35 153.3 97 79.4
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.5e-35 153.3 125 60.0
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 2.0e-35 152.9 104 72.1
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 2.6e-35 152.5 96 78.1
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 2.6e-35 152.5 106 71.7
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 3.3e-35 152.1 123 64.2
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 3.3e-35 152.1 97 77.3
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.3e-35 152.1 96 78.1
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 3.3e-35 152.1 103 74.8
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 4.4e-35 151.8 107 69.2
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 4.4e-35 151.8 121 62.0
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 5.7e-35 151.4 127 63.0
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 7.5e-35 151.0 96 77.1
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 7.5e-35 151.0 110 70.0
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 9.7e-35 150.6 97 76.3
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 2.2e-34 149.4 124 60.5
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 2.8e-34 149.1 127 62.2
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 4.8e-34 148.3 98 73.5
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 2.7e-32 142.5 103 70.9
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.7e-31 139.8 95 69.5
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 1.1e-30 137.1 96 62.5
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 1.9e-30 136.3 127 57.5
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 9.4e-30 134.0 113 61.9
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.7e-29 132.5 121 57.9
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 2.7e-29 132.5 142 52.1
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 4.7e-29 131.7 84 77.4
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 4.7e-29 131.7 84 77.4
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 6.1e-29 131.3 103 62.1
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 4.8e-26 121.7 104 61.5
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.1e-25 120.6 92 62.0
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 2.7e-24 115.9 113 50.4
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 8.5e-23 110.9 81 69.1
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 2.5e-22 109.4 118 48.3
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 8.8e-20 100.9 93 57.0
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 9.2e-17 90.9 55 74.5
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 5.9e-16 88.2 70 64.3
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 3.3e-14 82.4 88 52.3
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 8.9e-12 74.3 108 37.0
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.2e-11 73.9 92 40.2
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 3.4e-11 72.4 109 42.2
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 1.9e-06 56.6 74 43.2


User provided reference genes

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