Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 8.1e-163 577.0 292 100.0
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 7.1e-143 510.8 292 86.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.0e-141 506.9 292 86.0
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 2.3e-141 505.8 292 86.0
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 5.1e-141 504.6 292 84.6
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.5e-140 502.3 292 83.6
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 5.6e-140 501.1 292 83.6
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 7.4e-140 500.7 292 86.0
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.4e-140 500.7 292 83.9
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.8e-138 496.1 292 83.2
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 3.1e-138 495.4 292 83.6
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 3.1e-138 495.4 293 84.6
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.1e-138 495.4 292 82.5
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 4.0e-138 495.0 292 83.6
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 4.5e-137 491.5 292 83.6
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 5.8e-137 491.1 292 82.9
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 5.8e-137 491.1 290 83.8
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.0e-136 490.3 292 82.5
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 2.2e-136 489.2 292 82.9
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.8e-136 488.4 290 83.8
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 4.9e-136 488.0 292 81.2
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.9e-136 488.0 292 82.2
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.4e-135 486.5 292 83.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 4.2e-135 485.0 323 76.8
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.2e-135 485.0 294 82.7
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 9.3e-135 483.8 292 81.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.0e-133 480.3 280 83.2
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.1e-132 476.9 290 80.3
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.3e-132 475.3 290 82.1
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 3.3e-132 475.3 293 81.6
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 5.7e-132 474.6 290 80.3
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 5.7e-132 474.6 290 80.3
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.6e-131 473.0 291 79.7
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.6e-131 473.0 321 76.0
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.8e-131 472.2 294 81.0
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.4e-130 469.2 294 79.6
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.4e-130 469.2 292 80.8
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 2.4e-130 469.2 292 78.4
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.1e-130 468.8 292 78.8
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 2.6e-129 465.7 306 76.5
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.4e-129 465.3 292 80.8
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 3.4e-129 465.3 291 80.8
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.4e-129 465.3 326 72.7
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.5e-129 464.9 292 78.4
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 7.6e-129 464.2 292 79.5
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.0e-128 463.8 291 79.0
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.2e-128 462.6 291 80.1
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.9e-127 459.5 290 77.2
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 1.9e-127 459.5 293 78.8
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.5e-127 459.1 272 82.7
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 2.5e-127 459.1 291 78.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 7.2e-127 457.6 294 78.2
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 7.2e-127 457.6 292 77.7
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 9.3e-127 457.2 292 77.7
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 9.3e-127 457.2 290 76.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 3.6e-126 455.3 292 77.1
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.6e-126 455.3 292 76.0
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.0e-125 453.8 292 76.7
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 2.3e-125 452.6 292 77.1
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 3.0e-125 452.2 292 77.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 5.1e-125 451.4 297 75.8
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 6.7e-125 451.1 292 76.7
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 8.7e-125 450.7 292 76.7
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 9.7e-124 447.2 292 78.8
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 9.7e-124 447.2 268 80.2
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 2.8e-123 445.7 292 73.6
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 4.8e-123 444.9 292 75.3
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.4e-122 443.4 292 74.7
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 3.1e-122 442.2 292 76.0
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 6.9e-122 441.0 292 74.7
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.3e-120 436.8 292 75.7
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 3.8e-120 435.3 294 73.5
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 5.0e-120 434.9 292 74.0
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.1e-119 433.7 294 72.8
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.5e-119 432.6 290 72.8
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 3.2e-119 432.2 293 74.1
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 5.5e-119 431.4 292 73.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 9.4e-119 430.6 290 73.4
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.2e-118 430.3 237 88.2
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.1e-118 427.9 290 72.1
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.4e-117 426.8 290 72.4
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.8e-117 426.4 293 74.1
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 3.0e-117 425.6 328 68.0
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 6.7e-117 424.5 297 73.7
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 9.7e-116 420.6 385 61.3
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.3e-115 420.2 308 68.5
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 2.8e-115 419.1 293 73.4
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.8e-115 418.3 310 67.7
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.1e-114 417.2 293 71.7
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 3.1e-114 415.6 292 71.6
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 3.1e-114 415.6 292 71.6
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 4.1e-114 415.2 285 73.0
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 1.9e-111 406.4 292 72.6
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 9.4e-111 404.1 290 71.0
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 1.6e-110 403.3 290 71.4
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 2.1e-110 402.9 292 70.5
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 2.7e-110 402.5 292 69.9
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 4.7e-110 401.7 292 70.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 4.7e-110 401.7 299 68.6
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 6.1e-110 401.4 231 85.3
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 3.9e-109 398.7 293 69.3
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.5e-108 396.7 293 70.6
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.5e-108 396.7 293 67.6
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 2.0e-108 396.4 290 70.7
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 5.7e-108 394.8 291 71.1
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.2e-107 392.9 293 68.3
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-106 390.2 292 68.2
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-106 390.2 292 68.2
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.4e-106 389.4 292 68.8
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 9.1e-106 387.5 292 68.5
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 1.7e-104 383.3 292 67.5
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 1.5e-103 380.2 292 67.5
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 3.2e-103 379.0 297 66.3
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 6.7e-101 371.3 227 78.0
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.8e-101 370.9 290 66.9
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 9.7e-100 367.5 292 64.0
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-98 363.2 297 65.0
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.9e-95 353.2 191 88.5
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.1e-94 349.7 292 63.4
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.6e-94 349.0 208 83.2
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 8.8e-93 344.4 292 64.0
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 1.8e-90 336.7 239 70.7
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.4e-90 336.3 260 67.3
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.6e-89 333.6 293 59.4
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 2.0e-89 333.2 272 65.8
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.2e-86 323.9 289 58.8
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.4e-85 320.5 285 58.6
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 4.5e-81 305.4 185 78.4
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 3.4e-76 289.3 191 71.7
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 4.9e-75 285.4 202 70.8
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.2e-73 280.8 297 52.2
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 5.9e-73 278.5 298 49.0
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.3e-69 266.5 294 52.4
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.6e-60 236.5 290 48.6
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 8.1e-54 214.9 295 45.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 8.1e-54 214.9 295 45.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 8.1e-54 214.9 295 45.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.9e-53 211.5 263 50.6
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.8e-46 189.9 105 87.6
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 4.9e-43 179.1 108 80.6
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 5.1e-40 169.1 228 46.5
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-37 160.6 151 57.6
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.4e-36 156.4 153 56.9
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.9e-36 154.8 153 56.2
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.9e-36 154.8 153 56.2
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 3.8e-35 152.9 194 43.3
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 5.4e-34 149.1 84 85.7
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.0e-32 144.8 92 75.0
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.1e-30 137.1 107 63.6
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 4.9e-27 125.9 73 80.8
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 4.9e-27 125.9 73 80.8
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 1.9e-26 124.0 72 80.6
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 6.7e-24 115.5 95 66.3
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.9e-23 114.0 68 76.5
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.2e-18 96.3 59 74.6
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 7.1e-18 95.5 188 36.2
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 2.1e-17 94.0 128 44.5
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 6.3e-14 82.4 59 67.8
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 6.9e-13 79.0 86 50.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.2e-12 78.2 231 30.3
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.7e-11 74.3 58 65.5
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 2.5e-07 60.5 44 63.6
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 5.7e-07 59.3 44 61.4


User provided reference genes

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