Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 2120.1 1055 100.0
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1641.3 1052 76.0
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1602.8 1053 74.4
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1566.2 1052 72.1
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1564.7 1056 72.8
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1563.9 1053 71.5
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1562.7 1055 73.0
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1560.8 1052 72.2
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1553.5 1053 72.4
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1553.5 1052 71.3
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1552.3 1053 72.7
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1551.6 1053 71.9
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1548.1 1053 71.6
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1546.2 1052 71.7
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1542.3 1054 71.6
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1538.5 1053 70.9
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1534.6 1055 70.5
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1531.2 1052 70.6
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1531.2 1055 70.3
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1530.8 1053 70.9
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1526.5 1053 70.7
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1524.6 1052 70.7
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1524.6 1054 69.2
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1520.0 1054 70.6
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1519.6 1055 70.0
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1504.6 1118 66.2
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1503.8 1053 69.8
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1503.4 1051 69.6
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1502.3 1144 65.7
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1501.9 1053 69.7
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1497.6 1054 69.7
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1495.7 1052 69.0
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1495.3 1053 69.3
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1493.0 1052 68.9
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1490.7 1059 68.0
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1488.0 1053 68.4
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1485.3 1052 67.9
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1484.9 1058 68.9
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1482.6 1073 68.5
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1482.2 1059 68.5
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1481.1 1073 68.4
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1480.3 1059 68.6
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1479.5 1039 69.4
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1479.5 1053 69.2
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1476.8 1053 69.1
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1473.8 1058 69.8
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1052 67.8
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1472.2 1054 69.4
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1472.2 1053 69.1
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1052 68.1
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1470.7 1045 69.7
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1060 69.2
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1053 69.1
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1463.7 1140 65.0
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1455.3 1053 67.5
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1453.3 1053 67.9
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1448.3 1053 67.6
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1448.0 1130 64.5
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1446.0 1053 66.7
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1444.5 1040 68.8
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1444.5 1055 67.1
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1442.6 960 72.9
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1442.6 1052 68.2
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1442.2 1054 67.6
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1439.5 1053 67.1
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1437.6 1054 67.1
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1436.8 1052 66.4
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1436.0 1051 66.7
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1431.4 1055 66.3
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1428.3 1052 66.4
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1423.7 1053 66.5
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1419.1 1053 66.2
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1418.7 1053 66.1
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1407.1 1052 65.8
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1401.0 1054 65.7
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1400.2 1058 65.4
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1399.8 1053 67.1
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1399.0 1061 66.1
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1387.5 1062 64.9
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1383.2 1064 65.2
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1382.5 975 69.3
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1376.7 947 71.6
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1374.8 1093 63.2
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1367.4 1063 64.6
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1363.6 1056 64.2
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1360.9 1259 56.1
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1303.1 864 74.3
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1292.3 845 74.1
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1283.5 1053 61.3
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1270.0 790 78.4
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1225.3 852 70.1
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1219.5 800 74.8
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1090.9 1077 53.5
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.2e-309 1066.6 960 59.6
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 2.6e-304 1048.9 1063 52.4
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 1.9e-299 1032.7 787 64.7
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 2.4e-289 999.2 1079 50.3
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 7.5e-267 924.5 780 60.8
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 3.5e-264 915.6 631 71.5
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 1.9e-246 856.7 948 50.9
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 5.8e-243 845.1 662 64.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.8e-237 826.2 518 77.0
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 8.1e-229 798.1 517 71.8
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 7.6e-227 791.6 471 79.8
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 3.5e-208 729.6 447 75.2
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.3e-207 726.9 447 75.2
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.3e-205 721.1 470 71.5
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 1.4e-204 717.6 453 74.0
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 6.4e-202 708.8 450 72.4
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.2e-200 704.5 455 71.6
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 6.0e-200 702.2 489 67.9
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.3e-198 696.4 699 52.6
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.1e-196 691.4 449 73.3
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 6.5e-194 682.2 450 71.8
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.4e-193 681.0 462 69.7
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 2.5e-185 653.7 469 66.3
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 8.8e-167 592.0 580 54.3
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 2.0e-166 590.9 459 62.5
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 4.1e-164 583.2 450 62.4
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.1e-160 569.3 366 74.9
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.1e-156 558.5 425 63.8
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.5e-153 548.1 422 64.0
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.2e-149 534.3 366 69.7
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 6.5e-146 522.7 398 64.3
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 3.4e-142 510.4 611 47.0
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.2e-134 485.3 1118 31.4
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 2.5e-121 441.0 267 77.2
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 9.8e-118 429.1 242 84.7
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 7.1e-116 422.9 286 72.4
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.8e-112 411.0 271 75.6
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.5e-102 378.6 213 84.0
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 4.4e-102 377.1 237 76.8
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.9e-100 371.7 266 69.9
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.2e-100 370.5 238 74.4
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 8.7e-98 362.8 318 58.8
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 4.8e-72 277.3 156 82.1
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 8.8e-58 229.9 286 43.4
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 4.5e-54 217.6 208 51.0
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.1e-52 213.0 204 53.4
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 6.5e-45 187.2 183 59.0
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.9e-44 185.7 156 60.9
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 4.0e-42 177.9 121 68.6
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 8.8e-42 176.8 156 57.1
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 9.7e-41 173.3 178 53.4
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 2.2e-32 145.6 109 65.1
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 2.9e-29 135.2 140 48.6
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 3.8e-29 134.8 105 62.9
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 8.5e-29 133.7 141 48.2
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 2.5e-28 132.1 83 69.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.0e-26 126.7 85 65.9
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 1.4e-26 126.3 96 63.5
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 5.7e-25 120.9 96 61.5
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 3.1e-23 115.2 96 59.4
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 1.3e-21 109.8 55 87.3
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 8.0e-19 100.5 62 75.8
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.5e-17 96.3 83 53.0
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 3.4e-17 95.1 58 69.0
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 1.8e-15 89.4 56 67.9
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.4e-15 87.8 74 62.2
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 9.2e-15 87.0 75 60.0
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 2.0e-14 85.9 81 49.4
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 5.9e-14 84.3 77 51.9
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.7e-13 82.8 78 56.4
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.2e-11 76.6 53 67.9
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.1e-11 75.9 74 55.4
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 6.4e-08 64.3 36 77.8
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 8.3e-08 63.9 44 63.6
AUR62036524 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.2e-07 62.0 113 37.2
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 4.1e-07 61.6 41 68.3
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 7.0e-07 60.8 48 64.6
MBI03_g26335_MAGBIO Magnolia biondii HOM05D000553 ORTHO05D244274 2.0e-06 59.3 48 62.5


User provided reference genes

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