Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.1e-107 393.3 196 100.0
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 8.1e-42 174.5 99 85.9
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 8.1e-42 174.5 99 85.9
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 6.9e-41 171.4 99 83.8
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.2e-40 170.6 99 81.8
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.5e-40 170.2 99 83.8
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.5e-40 170.2 99 80.8
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.5e-40 170.2 99 83.8
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.5e-40 170.2 99 83.8
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 2.0e-40 169.9 99 81.8
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 4.5e-40 168.7 99 81.8
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 5.8e-40 168.3 99 81.8
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 5.8e-40 168.3 99 81.8
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 9.9e-40 167.5 99 79.8
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 9.9e-40 167.5 99 80.8
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 9.9e-40 167.5 99 82.8
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.3e-39 167.2 99 80.8
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 1.3e-39 167.2 99 81.8
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.3e-39 167.2 99 80.8
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.7e-39 166.8 98 84.7
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 1.7e-39 166.8 99 78.8
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.2e-39 166.4 99 79.8
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 2.2e-39 166.4 99 79.8
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.2e-39 166.4 99 80.8
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 3.8e-39 165.6 101 78.2
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 3.8e-39 165.6 99 80.8
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.9e-39 165.2 99 81.8
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.4e-39 164.9 99 79.8
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 6.4e-39 164.9 99 81.8
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 6.4e-39 164.9 98 81.6
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.4e-39 164.9 99 81.8
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 8.4e-39 164.5 99 78.8
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.1e-38 164.1 99 79.8
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.4e-38 163.7 99 77.8
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.9e-38 163.3 99 78.8
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.4e-38 162.9 99 76.8
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 2.4e-38 162.9 99 76.8
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 3.2e-38 162.5 99 76.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 3.2e-38 162.5 101 75.2
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.2e-38 162.5 101 76.2
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 3.2e-38 162.5 99 75.8
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 3.2e-38 162.5 99 77.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 3.2e-38 162.5 99 78.8
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 3.2e-38 162.5 99 77.8
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 4.2e-38 162.2 99 77.8
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 4.2e-38 162.2 99 76.8
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 4.2e-38 162.2 101 74.3
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 5.4e-38 161.8 99 77.8
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 5.4e-38 161.8 99 75.8
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 7.1e-38 161.4 99 75.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.3e-38 161.0 99 75.8
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 9.3e-38 161.0 99 75.8
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 9.3e-38 161.0 99 77.8
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 9.3e-38 161.0 99 79.8
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.2e-37 160.6 99 77.8
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 2.1e-37 159.8 99 74.7
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 2.1e-37 159.8 99 78.8
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 2.7e-37 159.5 99 76.8
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 3.5e-37 159.1 99 75.8
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 3.5e-37 159.1 99 74.7
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 3.5e-37 159.1 99 77.8
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.5e-37 159.1 99 74.7
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 4.6e-37 158.7 99 75.8
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.6e-37 158.7 96 81.2
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 7.9e-37 157.9 99 77.8
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 7.9e-37 157.9 99 74.7
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 1.0e-36 157.5 99 75.8
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.3e-36 157.1 99 73.7
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.3e-36 157.1 99 76.8
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 1.3e-36 157.1 99 76.8
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.3e-36 157.1 99 74.7
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.3e-36 157.1 99 74.7
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.8e-36 156.8 99 76.8
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.8e-36 156.8 99 73.7
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 3.0e-36 156.0 99 73.7
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 3.9e-36 155.6 100 74.0
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 5.1e-36 155.2 118 66.9
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 6.7e-36 154.8 99 71.7
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 6.7e-36 154.8 99 73.7
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.5e-35 153.7 111 68.5
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 2.5e-35 152.9 100 75.0
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 2.5e-35 152.9 100 75.0
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 2.5e-35 152.9 100 75.0
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.5e-35 152.9 98 78.6
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.3e-35 152.5 99 73.7
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.3e-35 152.5 99 73.7
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.3e-35 152.1 100 77.0
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.3e-35 152.1 100 77.0
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.3e-35 152.1 99 73.7
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 5.6e-35 151.8 99 73.7
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 5.6e-35 151.8 98 73.5
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 5.6e-35 151.8 99 70.7
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 7.4e-35 151.4 96 74.0
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 9.6e-35 151.0 100 74.0
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 1.3e-34 150.6 100 73.0
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.8e-34 149.4 99 72.7
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 2.8e-34 149.4 99 72.7
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 3.7e-34 149.1 99 72.7
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.7e-34 149.1 99 72.7
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 3.7e-34 149.1 99 70.7
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 4.8e-34 148.7 100 72.0
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 4.8e-34 148.7 99 72.7
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 6.2e-34 148.3 98 72.4
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.1e-33 147.5 99 71.7
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.1e-33 147.5 99 68.7
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 1.2e-32 144.1 100 66.0
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.2e-32 144.1 100 66.0
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.2e-32 144.1 100 69.0
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.2e-32 144.1 100 68.0
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.5e-32 143.7 100 66.0
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-32 143.7 99 73.7
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.4e-32 142.5 97 70.1
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 4.5e-32 142.1 100 66.0
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 7.6e-32 141.4 84 81.0
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.3e-31 140.6 100 67.0
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.9e-31 138.7 99 72.7
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 6.4e-31 138.3 100 66.0
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 8.4e-31 137.9 100 62.0
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 1.1e-30 137.5 100 63.0
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 5.5e-30 135.2 99 65.7
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.7e-29 132.9 100 67.0
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 6.0e-29 131.7 99 64.6
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 7.9e-29 131.3 100 65.0
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.0e-28 131.0 134 52.2
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 2.5e-27 126.3 109 61.5
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 7.4e-27 124.8 103 63.1
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.3e-26 124.0 99 63.6
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 4.8e-26 122.1 99 61.6
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 5.8e-24 115.2 99 58.6
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.9e-23 112.8 98 53.1
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.5e-19 100.5 101 51.5
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.4e-17 94.0 74 56.8
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 6.9e-17 91.7 50 84.0
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 2.2e-15 86.7 101 46.5
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.1e-14 84.3 105 44.8
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.6e-13 79.0 54 68.5
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.6e-13 79.0 54 68.5
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 7.9e-13 78.2 52 69.2
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 1.4e-12 77.4 101 39.6
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.7e-07 60.5 100 33.0
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 2.5e-06 56.6 35 77.1
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 7.2e-06 55.1 78 28.2


User provided reference genes

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