Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1996.1 985 100.0
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 0.0e+00 1182.9 995 61.8
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 0.0e+00 1130.9 992 59.9
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1122.5 989 59.0
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 0.0e+00 1118.6 993 59.4
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1105.9 989 60.0
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 0.0e+00 1094.0 990 58.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 0.0e+00 1089.3 990 57.2
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 3.4e-311 1071.6 1015 56.4
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 1.0e-310 1070.1 1034 54.6
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 8.1e-308 1060.4 1018 55.4
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.8e-307 1059.3 990 56.4
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 8.4e-305 1050.4 985 56.6
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 3.2e-304 1048.5 985 57.4
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 5.5e-304 1047.7 911 58.7
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.0e-303 1044.3 995 56.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.3e-302 1043.1 1013 55.7
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 1.8e-302 1042.7 944 57.4
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.1e-301 1040.0 999 55.6
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.1e-301 1040.0 980 57.1
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 5.6e-301 1037.7 992 55.6
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.3e-300 1036.6 991 55.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 3.7e-300 1035.0 986 54.8
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 2.4e-299 1032.3 987 55.9
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.1e-299 1031.9 981 56.8
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 6.9e-299 1030.8 1007 53.0
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.8e-298 1027.7 1013 55.3
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 3.8e-297 1025.0 993 55.4
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.4e-296 1023.1 986 54.4
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.2e-295 1020.0 998 53.7
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 2.2e-292 1009.2 1060 51.2
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 2.8e-292 1008.8 983 54.0
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 2.8e-292 1008.8 983 54.1
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 6.9e-291 1004.2 910 57.6
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 3.8e-289 998.4 985 53.8
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.1e-288 996.9 990 53.6
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.9e-288 996.1 1070 51.4
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 5.1e-286 988.0 744 65.7
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 8.8e-286 987.3 935 55.6
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 8.8e-286 987.3 993 53.7
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 4.8e-284 981.5 984 52.9
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 6.3e-284 981.1 1018 52.2
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 2.0e-282 976.1 993 54.1
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 2.0e-282 976.1 1018 52.0
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.0e-281 973.8 1021 53.1
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.1e-280 970.3 979 53.6
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.9e-280 969.5 987 53.2
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 5.5e-280 968.0 991 52.1
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.2e-279 966.8 986 52.4
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 4.7e-279 964.9 995 51.7
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.7e-279 964.9 979 52.0
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 1.4e-278 963.4 924 55.8
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 1.4e-278 963.4 994 53.6
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 5.1e-278 961.4 995 52.7
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 9.7e-277 957.2 904 56.2
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.0e-274 949.5 761 62.2
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.7e-273 946.4 979 54.1
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.7e-273 946.4 918 54.7
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.9e-273 945.7 935 54.1
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 4.2e-272 941.8 1028 51.2
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 5.7e-269 931.4 994 51.5
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 2.2e-268 929.5 993 51.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.3e-260 903.7 937 52.0
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.1e-259 900.6 990 50.6
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 3.1e-259 899.0 986 50.7
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 7.0e-259 897.9 1014 49.5
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.0e-257 894.0 988 49.8
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 2.9e-257 892.5 1011 50.1
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 6.5e-257 891.3 995 50.2
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 2.5e-256 889.4 978 49.0
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 2.5e-256 889.4 995 48.9
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.7e-255 885.9 998 49.2
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 5.2e-254 881.7 846 55.3
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 5.4e-251 871.7 685 63.2
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.2e-250 870.5 993 48.5
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 2.7e-250 869.4 993 48.6
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.3e-249 867.1 1010 47.7
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.7e-249 866.7 1008 48.7
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.3e-249 866.3 986 48.4
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.1e-248 864.0 989 49.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.5e-248 863.6 1001 47.9
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.4e-246 857.1 1032 46.9
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.4e-243 847.0 960 49.8
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.3e-240 834.7 995 47.0
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 3.3e-224 782.7 703 56.9
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 4.3e-216 755.7 568 65.0
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 8.4e-212 741.5 527 69.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.1e-208 731.1 995 43.1
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 6.2e-207 725.3 554 64.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 5.3e-206 722.2 755 50.9
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.6e-205 719.9 767 52.2
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.6e-199 700.7 460 73.5
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.1e-198 698.0 1054 40.5
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 4.6e-194 682.6 844 47.0
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.3e-193 681.0 765 50.5
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 1.5e-189 667.5 483 69.4
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.5e-189 667.5 1157 37.0
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 4.6e-186 656.0 801 44.7
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.5e-179 632.5 989 39.7
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 4.5e-165 586.3 600 51.0
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.9e-161 573.2 719 44.8
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.8e-159 567.0 755 43.0
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 4.8e-159 566.2 1045 37.5
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-148 530.0 755 42.1
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 4.2e-139 500.0 447 58.6
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 4.2e-139 500.0 447 58.6
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.8e-137 494.6 480 53.3
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.4e-136 490.0 747 38.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-135 488.0 612 44.8
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 3.1e-134 483.8 314 73.6
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 3.4e-128 463.8 281 77.2
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-125 455.3 610 43.3
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.3e-119 435.3 652 41.7
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.3e-116 425.2 360 59.4
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 1.8e-113 414.8 495 47.7
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-102 377.9 762 34.0
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 9.2e-102 375.9 457 47.0
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.8e-96 356.7 316 59.2
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.3e-91 339.7 622 37.3
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.1e-90 336.3 793 32.7
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 5.3e-89 333.6 489 39.9
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 1.3e-84 318.9 427 44.3
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 6.9e-81 306.6 415 41.0
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.3e-74 285.8 410 42.7
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 4.8e-74 283.9 655 31.1
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 3.0e-68 264.6 160 76.9
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 3.3e-67 261.2 270 50.7
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 2.2e-58 231.9 142 74.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 7.7e-56 223.4 408 37.5
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-52 212.6 191 55.0
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.9e-52 211.1 549 30.1
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 2.0e-51 208.8 717 27.5
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 4.2e-46 191.0 633 26.2
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 5.5e-46 190.7 110 82.7
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.1e-45 188.7 202 51.0
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-44 186.4 159 56.6
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 8.8e-44 183.3 165 57.6
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.3e-41 174.1 111 74.8
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 7.0e-41 173.7 276 36.6
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 7.7e-40 170.2 105 78.1
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.5e-38 166.0 149 58.4
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 6.7e-36 157.1 297 38.0
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.1e-29 134.0 676 24.3
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 5.7e-27 127.5 126 53.2
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 3.1e-25 121.7 89 65.2
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 9.1e-25 120.2 82 74.4
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.5e-22 112.1 86 62.8
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 2.1e-21 109.0 84 65.5
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.8e-20 103.6 190 38.4
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 9.8e-19 100.1 109 48.6
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 2.8e-18 98.6 78 64.1
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 1.0e-12 80.1 117 44.4
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 8.9e-12 77.0 64 56.2
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 4.6e-08 64.7 109 38.5
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-07 63.2 71 46.5
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 3.9e-07 61.6 73 42.5


User provided reference genes

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