Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.2e-201 706.4 407 100.0
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 8.2e-121 438.0 444 62.2
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 2.6e-98 363.2 428 56.3
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 4.4e-98 362.5 413 58.4
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.8e-96 357.1 413 59.6
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 3.1e-96 356.3 451 55.0
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 4.1e-96 355.9 558 48.4
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 1.6e-95 354.0 430 55.6
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 2.6e-95 353.2 424 56.6
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 7.7e-95 351.7 433 55.9
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 1.7e-94 350.5 492 52.6
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 6.5e-94 348.6 445 53.0
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 1.1e-93 347.8 409 55.3
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.0e-91 341.3 425 56.5
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 2.2e-89 333.6 496 50.2
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.7e-89 332.8 425 55.8
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 3.7e-89 332.8 431 52.0
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.8e-88 330.5 424 55.0
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.4e-88 330.1 425 56.2
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.4e-88 330.1 451 57.0
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.6e-87 327.4 444 52.0
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.7e-87 326.6 425 56.9
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 2.7e-87 326.6 432 53.9
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 4.5e-87 325.9 414 55.1
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 5.9e-87 325.5 502 46.6
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 5.9e-87 325.5 414 52.9
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 7.7e-87 325.1 459 51.0
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 1.0e-86 324.7 452 51.1
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 1.3e-86 324.3 419 55.4
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 3.8e-86 322.8 425 55.8
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.2e-85 319.3 461 53.4
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 4.2e-85 319.3 461 53.4
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 1.2e-84 317.8 411 56.7
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.6e-84 317.4 432 55.3
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 1.6e-84 317.4 445 50.8
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 4.7e-84 315.8 443 50.1
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 8.0e-84 315.1 431 55.9
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 8.0e-84 315.1 481 48.2
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 1.8e-83 313.9 480 47.7
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 5.2e-83 312.4 491 47.9
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 5.2e-83 312.4 460 49.8
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 8.8e-83 311.6 418 51.9
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 1.2e-82 311.2 468 49.1
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 3.4e-82 309.7 452 53.1
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 3.4e-82 309.7 411 51.3
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.4e-82 309.3 427 56.0
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 4.4e-82 309.3 427 56.0
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 7.5e-82 308.5 481 47.6
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 9.8e-82 308.1 444 54.5
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 9.8e-82 308.1 444 54.7
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 1.3e-81 307.8 449 52.1
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.3e-81 307.8 429 51.3
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 8.3e-81 305.1 450 52.7
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 1.8e-80 303.9 450 52.4
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 2.4e-80 303.5 423 53.4
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 7.0e-80 302.0 417 52.0
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 7.0e-80 302.0 508 45.5
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 1.2e-79 301.2 508 47.4
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.6e-79 300.8 458 51.5
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 4.5e-79 299.3 410 52.0
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 5.9e-79 298.9 452 52.0
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 7.7e-79 298.5 424 54.7
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.0e-78 298.1 539 42.9
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 2.3e-78 297.0 452 52.4
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 3.8e-78 296.2 574 44.4
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 7.2e-77 292.0 516 46.9
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 9.5e-77 291.6 463 51.4
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 1.6e-76 290.8 569 40.6
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 2.1e-76 290.4 449 50.1
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 2.1e-76 290.4 472 47.7
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 3.6e-76 289.7 529 45.9
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 6.8e-75 285.4 421 53.9
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.5e-74 284.3 489 48.9
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 2.6e-74 283.5 481 49.9
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 9.8e-74 281.6 510 46.3
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.7e-73 280.8 476 48.1
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.4e-72 276.9 513 46.4
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.6e-71 274.2 410 53.9
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 2.0e-71 273.9 594 42.6
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 7.8e-71 271.9 539 43.0
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 6.6e-70 268.9 435 48.7
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 5.6e-69 265.8 425 49.2
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 1.6e-68 264.2 480 47.3
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 2.8e-68 263.5 431 49.9
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 6.8e-67 258.8 515 43.7
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 6.8e-67 258.8 529 39.9
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.7e-65 254.2 602 40.5
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 2.2e-65 253.8 527 45.2
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.4e-65 252.3 580 41.4
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.4e-65 252.3 622 38.3
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 1.1e-64 251.5 545 40.2
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 5.4e-64 249.2 624 38.1
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 5.4e-64 249.2 624 38.1
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 1.2e-63 248.1 526 43.2
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 7.8e-63 245.4 171 76.6
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.3e-62 244.6 632 35.6
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.7e-62 244.2 550 41.1
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 3.0e-62 243.4 518 42.1
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.1e-59 233.4 242 58.7
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 1.4e-56 224.6 624 37.3
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 3.9e-54 216.5 418 44.0
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 8.1e-52 208.8 350 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.8e-51 207.6 233 54.1
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.8e-51 207.6 409 40.6
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 7.5e-50 202.2 172 66.9
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.5e-37 161.4 177 55.4
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.6e-37 159.5 383 36.8
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 9.6e-37 158.7 343 45.8
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 1.6e-36 157.9 205 47.3
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 4.0e-35 153.3 511 33.7
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.5e-34 151.4 93 83.9
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 2.0e-34 151.0 164 57.9
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 4.9e-33 146.4 95 78.9
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 6.4e-33 146.0 318 42.1
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.2e-32 143.3 108 76.9
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 6.0e-31 139.4 150 54.0
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 7.8e-31 139.0 82 89.0
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.6e-28 131.3 113 67.3
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 2.0e-26 124.4 103 64.1
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 1.0e-22 112.1 173 37.6
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.3e-22 111.7 377 33.7
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.5e-21 107.5 105 58.1
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 3.1e-19 100.5 213 40.4
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 2.6e-18 97.4 169 43.2
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 5.8e-18 96.3 68 70.6
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.6e-18 95.9 63 79.4
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 2.5e-16 90.9 183 35.5
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 4.2e-16 90.1 219 39.7
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 4.6e-15 86.7 52 82.7
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.1e-13 82.0 95 46.3
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.5e-10 71.6 110 40.9
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.0e-10 71.2 67 62.7
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.0e-09 66.6 95 41.1
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 1.8e-06 58.2 82 51.2
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 8.7e-06 55.8 461 25.2


User provided reference genes

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