Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.8e-225 785.0 412 100.0
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 7.8e-188 660.6 360 86.9
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 2.4e-184 649.0 359 87.5
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 5.3e-184 647.9 347 89.3
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 9.0e-184 647.1 366 85.8
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.0e-183 646.0 366 85.5
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 4.5e-183 644.8 343 89.2
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 5.8e-183 644.4 344 89.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.7e-182 642.9 344 88.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 2.2e-182 642.5 351 86.9
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 2.4e-181 639.0 345 88.1
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 4.2e-181 638.3 345 87.5
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 7.1e-181 637.5 357 84.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.6e-180 636.3 348 86.5
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 2.7e-180 635.6 347 87.3
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 2.7e-180 635.6 341 87.7
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 3.5e-180 635.2 346 86.7
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 3.5e-180 635.2 346 87.3
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 3.5e-180 635.2 348 86.8
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.5e-180 635.2 346 86.4
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.0e-179 633.6 357 85.7
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.0e-179 633.6 356 85.1
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.3e-179 633.3 347 85.9
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.3e-179 633.3 355 84.2
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 2.3e-179 632.5 354 83.9
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.3e-179 632.5 347 86.7
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.3e-179 632.5 364 84.6
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 8.7e-179 630.6 357 83.8
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 8.7e-179 630.6 345 86.4
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 8.7e-179 630.6 346 86.4
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.1e-178 630.2 350 85.4
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.1e-178 630.2 350 85.4
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.5e-178 629.8 350 86.3
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.5e-178 629.8 347 85.9
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 2.5e-178 629.0 345 87.5
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.5e-178 629.0 345 86.1
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.3e-178 628.6 355 84.8
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 4.3e-178 628.2 344 86.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 7.4e-178 627.5 355 84.5
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 7.4e-178 627.5 343 86.6
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.4e-178 627.5 345 85.8
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 7.4e-178 627.5 347 85.3
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 9.6e-178 627.1 349 85.7
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 9.6e-178 627.1 341 87.7
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 9.6e-178 627.1 355 85.4
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 9.6e-178 627.1 349 85.4
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.6e-177 626.3 345 85.2
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 2.1e-177 625.9 357 83.5
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.8e-177 625.5 355 83.4
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 3.7e-177 625.2 366 82.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 3.7e-177 625.2 343 86.0
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 3.7e-177 625.2 353 83.9
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.8e-177 624.8 366 81.7
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-176 623.6 343 85.7
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.1e-176 623.6 355 83.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.8e-176 622.9 343 85.4
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 5.3e-176 621.3 348 85.3
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 6.9e-176 620.9 341 86.5
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 9.0e-176 620.5 347 85.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 2.6e-175 619.0 354 82.8
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 4.5e-175 618.2 345 84.3
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 7.6e-175 617.5 350 84.9
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.0e-174 617.1 341 86.2
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-174 616.7 344 85.5
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.3e-174 616.7 346 85.3
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.7e-174 616.3 346 84.4
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.2e-174 615.9 340 85.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 2.2e-174 615.9 368 80.4
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 6.5e-174 614.4 366 80.3
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 6.5e-174 614.4 344 85.2
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.5e-174 614.4 351 82.6
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 8.4e-174 614.0 340 84.4
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.1e-173 613.6 357 82.4
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.4e-173 613.2 366 80.1
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.4e-173 613.2 366 80.1
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.4e-173 613.2 340 84.1
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.9e-173 612.8 344 84.9
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 4.2e-173 611.7 372 79.6
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 5.5e-173 611.3 344 84.6
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 7.1e-173 610.9 344 86.0
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 9.3e-173 610.5 354 81.1
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.6e-172 609.8 340 85.6
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 1.6e-172 609.8 344 83.4
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 2.1e-172 609.4 349 84.5
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.1e-172 609.4 341 85.3
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.1e-172 609.4 344 83.1
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 3.5e-172 608.6 345 83.8
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 7.9e-172 607.4 331 87.3
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.0e-171 607.1 347 83.6
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 5.1e-171 604.7 371 79.8
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 8.7e-171 604.0 342 84.5
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.1e-170 603.6 414 72.2
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.5e-170 603.2 355 81.1
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 9.6e-170 600.5 342 83.9
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.8e-169 599.0 349 82.2
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 3.7e-169 598.6 353 80.2
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 8.2e-169 597.4 353 81.3
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.8e-168 596.3 308 89.9
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-167 593.6 357 79.6
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 4.5e-167 591.7 348 82.8
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.2e-166 589.3 301 90.0
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 5.0e-166 588.2 325 84.9
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 6.5e-166 587.8 319 87.8
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 7.9e-164 580.9 326 85.3
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.0e-163 580.5 330 82.1
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 7.4e-162 574.3 352 78.7
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 5.9e-159 564.7 321 84.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 8.5e-158 560.8 321 83.8
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.9e-157 559.7 331 80.7
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 5.5e-157 558.1 347 77.5
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 4.6e-156 555.1 343 79.3
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 3.0e-155 552.4 358 78.2
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 5.7e-154 548.1 357 74.5
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 3.7e-153 545.4 499 58.7
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.1e-152 542.3 347 73.5
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.5e-151 540.0 350 72.9
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 5.9e-151 538.1 498 57.8
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 6.5e-150 534.6 550 53.5
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 5.5e-149 531.6 357 70.3
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 7.9e-148 527.7 359 70.8
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 1.8e-144 516.5 303 77.6
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 3.7e-137 492.3 243 90.9
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.7e-130 468.4 294 76.2
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 3.7e-129 465.7 351 65.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 5.0e-126 455.3 346 68.2
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.0e-123 447.6 307 67.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.3e-121 440.7 347 61.4
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.9e-113 412.9 256 78.1
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 5.9e-111 405.2 254 78.7
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 6.4e-105 385.2 345 56.5
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 3.5e-103 379.4 212 82.5
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 4.6e-103 379.0 339 56.0
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.7e-102 377.1 217 82.0
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.0e-95 352.1 218 77.5
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 3.7e-89 332.8 288 53.8
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.6e-87 327.4 208 75.0
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.2e-81 307.0 203 75.9
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-67 261.5 127 94.5
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.5e-66 257.7 319 42.3
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.5e-66 257.7 347 41.5
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 7.6e-66 255.4 317 43.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 2.9e-65 253.4 361 39.1
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.8e-65 253.1 337 40.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.2e-58 231.5 320 40.3
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.2e-55 221.5 337 40.1
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 5.1e-54 216.1 179 64.2
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 6.9e-51 205.7 247 40.9
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 8.7e-46 188.7 114 82.5
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.1e-43 181.8 155 61.9
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 6.3e-28 129.4 92 72.8
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.2e-25 120.9 56 92.9
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 2.1e-23 114.4 159 45.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 2.2e-20 104.4 64 81.2
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.5e-16 90.9 93 58.1
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 5.5e-16 89.7 49 81.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 9.4e-16 89.0 134 45.5
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 1.8e-14 84.7 83 59.0
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 8.3e-12 75.9 33 90.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 2.2e-09 67.8 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 2.5e-08 64.3 31 87.1
HanXRQChr08g0215991 Helianthus annuus HOM05D033391 ORTHO05D220840 2.3e-06 57.8 27 88.9
HanXRQChr11g0343191 Helianthus annuus HOM05D033391 ORTHO05D220967 4.0e-06 57.0 25 96.0


User provided reference genes

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