Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 3.4e-37 157.9 85 100.0
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 7.7e-13 77.0 59 74.6
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 3.2e-11 71.6 58 70.7
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 5.5e-11 70.9 65 64.6
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 9.4e-11 70.1 63 63.5
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 3.6e-10 68.2 65 60.0
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 3.6e-10 68.2 56 69.6
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 3.6e-10 68.2 59 66.1
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 4.6e-10 67.8 65 60.0
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 1.0e-09 66.6 59 64.4
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 1.0e-09 66.6 59 67.8
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 1.0e-09 66.6 59 69.5
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 1.4e-09 66.2 64 62.5
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 1.4e-09 66.2 58 63.8
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 1.4e-09 66.2 58 63.8
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 1.8e-09 65.9 58 67.2
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 1.8e-09 65.9 59 61.0
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 2.3e-09 65.5 58 60.3
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 2.3e-09 65.5 59 64.4
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 3.0e-09 65.1 56 67.9
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 5.1e-09 64.3 58 62.1
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 5.1e-09 64.3 58 60.3
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 5.1e-09 64.3 59 64.4
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 5.1e-09 64.3 59 62.7
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 6.7e-09 63.9 60 66.7
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 6.7e-09 63.9 66 65.2
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 8.8e-09 63.5 66 65.2
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 8.8e-09 63.5 59 64.4
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 8.8e-09 63.5 57 68.4
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 8.8e-09 63.5 57 68.4
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 8.8e-09 63.5 57 68.4
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 8.8e-09 63.5 57 68.4
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 8.8e-09 63.5 58 58.6
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 1.1e-08 63.2 58 55.2
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 1.5e-08 62.8 57 66.7
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 1.5e-08 62.8 57 66.7
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 1.5e-08 62.8 64 57.8
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 1.9e-08 62.4 59 61.0
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 2.5e-08 62.0 58 63.8
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 3.3e-08 61.6 59 59.3
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 3.3e-08 61.6 58 67.2
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 3.3e-08 61.6 58 67.2
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 5.7e-08 60.8 58 60.3
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 5.7e-08 60.8 59 61.0
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 5.7e-08 60.8 58 63.8
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 7.4e-08 60.5 59 55.9
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 7.4e-08 60.5 59 62.7
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 7.4e-08 60.5 58 62.1
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 7.4e-08 60.5 65 61.5
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.3e-07 59.7 63 57.1
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.3e-07 59.7 63 57.1
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 1.3e-07 59.7 63 57.1
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.3e-07 59.7 63 57.1
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 1.3e-07 59.7 63 58.7
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.3e-07 59.7 57 57.9
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 1.3e-07 59.7 59 59.3
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 1.7e-07 59.3 60 60.0
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 1.7e-07 59.3 66 53.0
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 2.2e-07 58.9 67 55.2
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 2.8e-07 58.5 68 52.9
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 6.3e-07 57.4 57 57.9
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 8.2e-07 57.0 59 55.9
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 1.1e-06 56.6 64 54.7
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 1.4e-06 56.2 56 60.7
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 1.4e-06 56.2 58 53.4
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 1.4e-06 56.2 59 61.0
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 1.8e-06 55.8 49 63.3
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 1.8e-06 55.8 50 64.0
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.8e-06 55.8 61 54.1
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 1.8e-06 55.8 59 61.0
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 1.8e-06 55.8 59 57.6
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 2.4e-06 55.5 55 61.8
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 3.1e-06 55.1 58 56.9
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 3.1e-06 55.1 66 56.1
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 4.1e-06 54.7 59 55.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 4.1e-06 54.7 59 55.9
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 5.3e-06 54.3 58 58.6
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 6.9e-06 53.9 58 55.2
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 9.1e-06 53.5 56 57.1
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 9.1e-06 53.5 58 55.2
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 9.1e-06 53.5 64 54.7


User provided reference genes

Program Settings