Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 1.1e-233 813.9 852 100.0
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 1.6e-126 458.0 847 75.8
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 2.1e-126 457.6 807 75.0
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 3.9e-125 453.4 837 78.3
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 1.0e-120 438.7 799 79.1
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 2.5e-119 434.1 901 72.4
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 1.5e-116 424.9 794 79.8
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 2.6e-116 424.1 800 77.0
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 2.0e-113 414.5 852 76.3
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 8.5e-112 409.1 822 77.6
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 1.0e-109 402.1 824 77.5
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 3.0e-109 400.6 794 75.2
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 6.7e-109 399.4 820 69.4
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 7.5e-108 396.0 854 71.2
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 5.3e-106 389.8 874 55.5
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 2.2e-104 384.4 809 71.7
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 5.5e-103 379.8 823 77.0
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 8.8e-101 372.5 801 79.3
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 2.4e-98 364.4 788 78.6
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 5.4e-98 363.2 800 66.9
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 2.7e-97 360.9 783 78.9
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 3.5e-97 360.5 788 68.1
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 1.0e-96 359.0 793 67.6
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 1.0e-96 359.0 793 67.6
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.7e-96 358.2 781 67.5
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 6.5e-96 356.3 799 75.2
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 8.6e-96 355.9 806 73.6
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 8.6e-96 355.9 811 76.4
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 8.6e-96 355.9 788 75.3
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 1.1e-95 355.5 787 73.8
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 1.2e-94 352.1 799 68.6
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 1.0e-93 349.0 802 76.4
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 5.2e-93 346.7 786 77.6
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 8.9e-93 345.9 806 76.4
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 1.2e-92 345.5 786 77.5
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 4.4e-92 343.6 807 74.8
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 1.3e-91 342.0 833 65.2
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 1.3e-91 342.0 775 78.3
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 1.7e-91 341.7 786 77.5
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 1.7e-91 341.7 767 61.1
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 9.2e-90 335.9 800 75.9
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 9.2e-90 335.9 820 75.1
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 2.0e-89 334.7 784 65.6
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 4.5e-89 333.6 819 69.2
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 4.5e-89 333.6 838 62.8
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 2.9e-88 330.9 800 76.4
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 7.3e-87 326.2 793 76.4
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 6.8e-85 319.7 807 75.5
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 2.6e-84 317.8 819 74.2
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 2.9e-83 314.3 820 73.4
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 3.7e-83 313.9 820 73.2
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 3.7e-83 313.9 795 76.4
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 8.3e-83 312.8 824 73.9
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 1.1e-82 312.4 831 72.3
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 3.2e-82 310.8 756 77.8
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 4.6e-81 307.0 798 68.0
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 1.0e-80 305.8 792 74.9
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 1.3e-80 305.4 793 73.3
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 1.7e-80 305.1 801 71.8
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 2.3e-80 304.7 783 75.9
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 5.6e-79 300.1 783 75.0
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 5.6e-79 300.1 798 67.9
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 1.6e-78 298.5 803 73.7
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 2.8e-78 297.7 800 67.0
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 4.7e-78 297.0 779 73.9
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 4.0e-77 293.9 783 74.8
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 1.3e-75 288.9 787 74.5
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.1e-74 285.8 166 75.3
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 1.6e-73 282.0 806 73.3
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 1.7e-72 278.5 342 78.7
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.1e-71 275.8 741 77.5
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 1.9e-71 275.0 848 54.2
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.5e-71 274.6 814 60.8
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 2.5e-71 274.6 165 74.5
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 5.6e-71 273.5 348 78.2
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.8e-70 271.2 335 79.4
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 3.6e-70 270.8 330 80.0
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 5.2e-69 266.9 776 72.6
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 6.8e-69 266.5 779 73.2
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 1.7e-67 261.9 372 74.5
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 4.9e-67 260.4 163 69.9
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 6.0e-65 253.4 774 69.9
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 2.3e-64 251.5 782 54.9
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 2.4e-61 241.5 183 62.3
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 8.9e-61 239.6 163 68.7
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 5.8e-60 236.9 360 73.9
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 9.9e-60 236.1 331 75.8
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 8.4e-59 233.0 781 71.2
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 2.4e-58 231.5 148 71.6
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 5.4e-58 230.3 251 59.0
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 1.2e-57 229.2 146 69.9
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.8e-54 218.0 246 62.6
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 1.5e-52 212.2 733 74.6
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 3.0e-48 198.0 171 57.3
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 9.6e-47 193.0 165 55.8
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 1.6e-46 192.2 695 78.0
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 3.6e-46 191.0 161 54.0
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 4.9e-43 180.6 550 36.5
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 1.4e-42 179.1 161 54.7
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.9e-42 178.7 156 54.5
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 4.2e-42 177.6 152 51.3
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 1.0e-40 172.9 155 51.0
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 3.9e-40 171.0 130 61.5
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 8.7e-40 169.9 122 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 6.2e-38 163.7 124 59.7
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 3.1e-37 161.4 186 53.8
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 4.5e-36 157.5 135 60.0
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 1.3e-32 146.0 135 54.1
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 1.6e-30 139.0 143 42.7
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 8.2e-30 136.7 109 58.7
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 6.9e-29 133.7 113 55.8
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.7e-27 129.0 119 54.6
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 2.2e-27 128.6 67 82.1
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 1.1e-26 126.3 239 64.0
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 7.1e-26 123.6 121 47.9
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 1.2e-25 122.9 97 52.6
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 2.2e-22 112.1 76 63.2
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 3.1e-21 108.2 76 63.2
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 1.2e-20 106.3 81 55.6
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.3e-19 102.8 88 53.4
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 2.7e-17 95.1 82 56.1
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 2.6e-12 78.6 122 68.9
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 5.0e-11 74.3 67 49.3
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 6.1e-09 67.4 111 36.9
Gohir.A08G088300 Gossypium hirsutum HOM05D006258 ORTHO05D007961 3.3e-07 61.6 180 22.8
Rhsim09G0172900 Rhododendron simsii HOM05D006106 ORTHO05D007662 5.7e-07 60.8 101 33.7
Gohir.D08G099500 Gossypium hirsutum HOM05D006258 ORTHO05D007961 9.7e-07 60.1 180 22.2
Gorai.004G107200 Gossypium raimondii HOM05D006258 ORTHO05D007961 1.7e-06 59.3 180 21.7
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 2.8e-06 58.5 150 26.7
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 2.8e-06 58.5 89 36.0
Thecc.09G153300 Theobroma cacao HOM05D006258 ORTHO05D007961 6.3e-06 57.4 180 22.8
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 6.3e-06 57.4 78 37.2


User provided reference genes

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