Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 0.0e+00 1597.8 1044 100.0
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 3.9e-199 699.5 692 63.4
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 8.9e-196 688.3 696 62.1
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.5e-195 687.6 687 63.0
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.4e-193 681.0 682 62.9
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.1e-193 678.7 675 62.5
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 2.7e-192 676.8 680 63.1
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.8e-189 666.8 1022 52.8
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.1e-188 664.8 697 60.8
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 4.0e-188 662.9 723 60.2
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.0e-188 662.9 681 63.6
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.5e-187 661.0 665 61.5
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 2.6e-187 660.2 630 64.9
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 3.8e-186 656.4 648 62.7
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.2e-185 653.3 647 62.6
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 3.2e-185 653.3 651 62.2
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 3.2e-185 653.3 757 58.4
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 4.1e-185 652.9 776 55.5
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 9.2e-185 651.7 490 74.9
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.6e-184 651.0 704 60.4
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 2.1e-184 650.6 490 74.3
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.3e-183 647.9 687 60.0
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.3e-183 647.9 630 64.9
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.0e-183 646.7 545 69.2
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.1e-182 644.8 689 61.0
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 1.1e-182 644.8 642 61.5
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 4.7e-181 639.4 700 61.9
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 6.2e-181 639.0 700 61.6
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.2e-181 639.0 663 62.1
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 6.2e-181 639.0 645 61.4
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 6.2e-181 639.0 759 55.9
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 3.1e-180 636.7 788 54.6
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 4.0e-180 636.3 601 64.6
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 8.9e-180 635.2 694 57.9
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 1.5e-179 634.4 773 57.3
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 5.8e-179 632.5 689 59.7
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 9.9e-179 631.7 691 60.1
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.7e-178 630.9 646 64.1
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 3.2e-177 626.7 638 65.5
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 7.1e-177 625.5 615 64.4
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 7.8e-176 622.1 500 71.2
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 2.3e-175 620.5 829 51.0
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 8.7e-175 618.6 665 58.9
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.1e-173 614.0 846 52.1
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 4.8e-173 612.8 656 60.1
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 4.8e-173 612.8 684 59.8
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 6.2e-173 612.5 493 71.0
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.4e-172 611.3 689 59.8
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 5.3e-172 609.4 713 58.6
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.0e-171 607.4 693 57.3
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 2.6e-171 607.1 685 58.5
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 2.6e-171 607.1 525 68.4
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.8e-171 605.9 685 58.4
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 7.6e-171 605.5 549 64.1
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 7.6e-171 605.5 685 58.2
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.3e-170 604.7 628 61.9
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.2e-170 604.0 685 58.4
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 6.4e-170 602.4 549 67.2
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.4e-169 601.3 551 63.2
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.6e-168 597.8 679 59.4
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 2.1e-168 597.4 693 57.3
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.5e-168 596.7 685 58.5
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.3e-167 594.7 672 60.7
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.3e-167 594.7 698 56.6
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.0e-167 593.6 832 54.8
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 1.9e-166 590.9 526 64.3
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.9e-166 590.9 700 58.3
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 3.3e-166 590.1 698 55.4
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.6e-166 589.3 492 67.7
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 7.4e-166 589.0 724 56.8
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 9.6e-166 588.6 526 66.5
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.3e-165 588.2 641 59.9
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.1e-165 587.4 695 59.7
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 2.8e-165 587.0 526 63.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 2.8e-165 587.0 526 63.9
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 6.2e-165 585.9 636 61.0
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 8.1e-165 585.5 526 63.7
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.1e-164 585.1 660 61.2
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.4e-164 583.9 792 52.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 5.3e-164 582.8 695 62.7
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 9.0e-164 582.0 713 61.4
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.6e-163 580.5 633 58.5
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 3.4e-163 580.1 670 59.6
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.5e-163 579.7 694 59.2
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 8.4e-162 575.5 636 59.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 3.2e-161 573.5 687 59.7
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 9.3e-161 572.0 690 57.4
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 4.6e-160 569.7 667 60.7
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.8e-159 567.8 678 57.4
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.3e-158 563.1 502 65.7
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 8.4e-154 548.9 778 52.3
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.1e-153 548.5 683 58.4
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 7.9e-152 542.3 494 65.8
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 1.8e-148 531.2 642 55.3
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 5.3e-148 529.6 722 54.2
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 2.7e-144 517.3 694 51.9
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 6.1e-144 516.2 608 58.2
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 6.5e-138 496.1 656 53.0
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 4.2e-137 493.4 656 52.7
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 5.9e-131 473.0 688 50.1
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 3.8e-122 443.7 510 60.2
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 6.1e-120 436.4 508 55.3
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 5.7e-118 429.9 565 52.9
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 2.7e-115 421.0 516 59.7
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 4.5e-115 420.2 515 52.8
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.6e-110 404.4 322 72.7
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.2e-104 385.6 294 69.7
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.5e-89 334.7 219 75.8
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 3.4e-86 324.3 537 41.0
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 4.4e-86 323.9 500 46.6
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 5.6e-73 280.4 177 81.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 2.8e-72 278.1 274 67.2
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 2.0e-70 271.9 299 58.9
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.4e-70 271.2 495 43.2
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.4e-70 271.2 495 43.4
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.7e-69 268.9 428 45.8
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 5.6e-65 253.8 361 59.0
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 2.4e-63 248.4 312 48.4
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 7.1e-60 236.9 360 54.2
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 5.6e-57 227.3 208 63.5
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 2.1e-56 225.3 178 71.3
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.4e-52 212.6 537 44.5
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 4.8e-24 117.9 70 80.0
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 3.8e-21 108.2 140 50.0
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 7.2e-20 104.0 71 74.6
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 1.8e-18 99.4 88 54.5
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 5.1e-18 97.8 298 31.9
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 6.3e-16 90.9 420 26.0
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 8.2e-16 90.5 86 73.3
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 1.8e-15 89.4 96 53.1
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 9.1e-15 87.0 365 28.8
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 5.9e-14 84.3 263 34.6
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 5.0e-13 81.3 94 51.1
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 8.5e-13 80.5 96 51.0
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.5e-09 69.7 75 68.0
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 2.6e-09 68.9 410 32.7
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 8.2e-08 63.9 91 48.4
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 4.1e-07 61.6 116 52.6
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 9.1e-07 60.5 95 54.7
Sed0006524 Sechium edule HOM05D000142 ORTHO05D003173 2.0e-06 59.3 84 40.5
DCAR_008256 Daucus carota HOM05D000142 ORTHO05D003173 4.5e-06 58.2 93 41.9
CsaV3_3G001570 Cucumis sativus L. HOM05D000142 ORTHO05D003173 7.7e-06 57.4 84 39.3
Potri.001G141300 Populus trichocarpa HOM05D000142 ORTHO05D003173 7.7e-06 57.4 96 40.6


User provided reference genes

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