Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0009090 Simmondsia chinensis HOM05D002263 ORTHO05D003537 6.9e-223 776.9 380 100.0
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 5.0e-112 408.7 378 58.2
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 8.5e-96 354.8 372 52.7
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 3.9e-93 345.9 372 51.3
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.1e-92 344.4 375 50.7
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 1.5e-92 344.0 370 50.0
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.5e-92 344.0 370 50.0
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.6e-92 343.2 385 50.1
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.6e-92 343.2 370 49.7
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.6e-92 343.2 370 49.7
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 3.3e-92 342.8 370 49.7
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 4.4e-92 342.4 378 49.5
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 4.4e-92 342.4 370 49.7
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 5.7e-92 342.0 372 51.1
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 9.7e-92 341.3 378 49.5
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 1.4e-90 337.4 378 48.4
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 1.8e-90 337.0 370 49.5
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 3.1e-90 336.3 370 49.7
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 3.1e-90 336.3 370 49.5
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 4.1e-90 335.9 381 47.8
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 1.6e-89 334.0 391 47.6
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 1.6e-89 334.0 383 47.3
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 2.6e-89 333.2 370 49.7
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 4.5e-89 332.4 378 48.1
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 4.5e-89 332.4 378 48.1
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 4.5e-89 332.4 378 48.1
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 5.9e-89 332.0 378 48.4
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 5.9e-89 332.0 378 48.4
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.0e-88 331.3 380 48.9
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.0e-88 331.3 378 47.1
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 1.3e-88 330.9 377 47.7
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.3e-88 330.9 378 47.9
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 1.7e-88 330.5 378 48.1
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 1.7e-88 330.5 380 48.4
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 2.9e-88 329.7 383 47.0
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 6.5e-88 328.6 379 48.3
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 8.5e-88 328.2 370 48.9
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 8.5e-88 328.2 383 46.7
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 1.5e-87 327.4 381 46.7
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 3.2e-87 326.2 370 48.9
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 5.5e-87 325.5 377 47.2
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 5.5e-87 325.5 373 47.7
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 7.2e-87 325.1 383 46.0
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 9.4e-87 324.7 371 48.5
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 9.4e-87 324.7 387 46.0
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 9.4e-87 324.7 387 46.0
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 1.2e-86 324.3 370 48.1
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 1.2e-86 324.3 370 46.5
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 1.6e-86 323.9 380 46.8
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 2.1e-86 323.6 383 46.0
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.7e-86 323.2 370 48.4
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 2.7e-86 323.2 370 47.6
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 2.7e-86 323.2 398 45.2
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 3.6e-86 322.8 376 49.5
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 3.6e-86 322.8 370 46.2
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 3.6e-86 322.8 398 45.0
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 4.7e-86 322.4 381 46.7
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 6.1e-86 322.0 376 50.0
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 6.1e-86 322.0 369 46.1
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 6.1e-86 322.0 380 48.2
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 6.1e-86 322.0 378 48.9
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 6.1e-86 322.0 373 47.2
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 8.0e-86 321.6 372 48.1
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.0e-85 321.2 370 47.6
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.4e-85 320.9 366 47.8
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 2.3e-85 320.1 378 47.4
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 2.3e-85 320.1 369 46.6
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 3.0e-85 319.7 368 47.0
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.0e-85 319.7 366 47.8
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 4.0e-85 319.3 383 46.0
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 5.2e-85 318.9 370 47.3
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 5.2e-85 318.9 370 47.3
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 5.2e-85 318.9 370 47.3
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 6.7e-85 318.5 370 47.0
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 6.7e-85 318.5 390 47.2
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 6.7e-85 318.5 370 47.0
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 6.7e-85 318.5 390 45.9
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 6.7e-85 318.5 383 46.0
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 8.8e-85 318.2 370 46.8
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 8.8e-85 318.2 370 46.8
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 8.8e-85 318.2 368 48.6
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 8.8e-85 318.2 369 49.1
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 8.8e-85 318.2 369 49.1
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 1.2e-84 317.8 370 47.0
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 1.2e-84 317.8 370 47.0
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 1.2e-84 317.8 377 46.2
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.2e-84 317.8 369 45.5
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 1.2e-84 317.8 369 46.6
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 2.0e-84 317.0 378 47.9
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 2.6e-84 316.6 368 48.4
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 2.6e-84 316.6 385 46.8
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 2.6e-84 316.6 369 46.3
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 4.4e-84 315.8 370 46.8
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.4e-84 315.8 391 45.0
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.4e-84 315.8 391 45.0
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 5.7e-84 315.5 383 45.2
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 7.5e-84 315.1 371 47.2
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 7.5e-84 315.1 371 47.2
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 7.5e-84 315.1 370 46.8
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 7.5e-84 315.1 368 47.3
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.7e-83 313.9 372 46.8
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.2e-83 313.5 368 46.5
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 2.8e-83 313.2 368 45.9
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 3.7e-83 312.8 368 46.7
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 6.3e-83 312.0 380 44.7
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 6.3e-83 312.0 363 47.7
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 8.2e-83 311.6 372 47.3
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 8.2e-83 311.6 368 46.5
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 1.1e-82 311.2 368 45.9
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 4.1e-82 309.3 368 45.7
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 7.0e-82 308.5 380 45.0
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.6e-81 307.4 380 43.7
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.6e-81 307.4 391 44.0
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 2.7e-81 306.6 372 46.8
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 4.5e-81 305.8 387 45.5
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 5.9e-81 305.4 366 44.3
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 5.9e-81 305.4 382 44.5
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 7.7e-81 305.1 338 49.1
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 7.7e-81 305.1 383 43.9
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.3e-80 304.3 380 43.9
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.7e-80 303.9 380 43.4
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 3.8e-80 302.8 380 43.9
SEGI_10251 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 5.0e-80 302.4 385 43.9
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.5e-79 300.8 380 43.2
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 1.9e-79 300.4 380 43.7
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 4.2e-79 299.3 378 45.5
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 3.6e-78 296.2 368 44.3
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 6.8e-77 292.0 378 44.4
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 2.2e-75 287.0 387 42.4
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.6e-73 280.8 371 43.7
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 7.7e-73 278.5 379 42.5
AL8G14170 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.5e-71 273.5 382 42.1
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 7.2e-71 271.9 377 42.4
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.8e-69 267.3 380 42.1
Hma1.2p1_2160F.1_g315570 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 1.5e-68 264.2 320 44.7
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 7.5e-68 261.9 381 38.3
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 1.3e-67 261.2 367 39.8
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 3.1e-66 256.5 345 42.9
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 5.9e-65 252.3 371 38.8
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 5.8e-60 235.7 384 39.6
Os01g0234200 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 7.5e-60 235.3 365 37.3
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 2.7e-57 226.9 337 40.1
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 6.6e-56 222.2 349 39.5
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 5.6e-47 192.6 328 37.8
CiPaw.14G099100 Carya illinoinensis HOM05D002263 ORTHO05D003537 7.3e-47 192.2 175 56.0
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 6.8e-45 185.7 168 57.1
BcaC05g30482 Brassica carinata HOM05D002263 ORTHO05D003537 4.4e-44 183.0 396 33.6
COL.COLO4_15050 Corchorus olitorius HOM05D002263 ORTHO05D003537 2.8e-38 163.7 169 49.1
TWI09G0750 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 4.0e-37 159.8 167 47.9
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 5.2e-37 159.5 270 40.7
SEGI_32368 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 9.9e-36 155.2 157 48.4
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 2.2e-35 154.1 157 49.7
Medtr0756s0010 Medicago truncatula HOM05D002263 ORTHO05D003537 4.9e-35 152.9 166 50.0
QL10p065355 Quercus lobata HOM05D002263 ORTHO05D029945 4.3e-23 113.2 104 55.8
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 1.1e-21 108.6 208 33.2
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 4.2e-18 96.7 84 59.5
Psat0s2398g0120 Pisum sativum HOM05D002263 ORTHO05D003537 1.1e-15 88.6 121 42.1
Sp5g19340 Schrenkiella parvula HOM05D002263 ORTHO05D029945 1.9e-15 87.8 121 41.3
Rhsim09G0080900 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.6e-15 86.3 338 26.6
AL8G27570 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 9.6e-15 85.5 105 44.8
Sabra16G0162200 Salix brachista HOM05D002263 ORTHO05D016312 3.4e-12 77.0 77 48.1
Hma1.2p1_2118F.1_g314330 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 2.2e-11 74.3 125 33.6
SEGI_23785 Sequoiadendron giganteum HOM05D002263 ORTHO05D029945 2.9e-11 73.9 85 48.2
Hma1.2p1_0326F.1_g126200 Hydrangea macrophylla HOM05D002263 ORTHO05D029945 7.1e-10 69.3 85 48.2
Medtr8g447140 Medicago truncatula HOM05D002263 ORTHO05D003537 1.6e-09 68.2 79 44.3
vmacro08887 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 1.3e-08 65.1 79 41.8
MD01G1165800 Malus domestica HOM05D002263 ORTHO05D003537 3.0e-08 63.9 85 40.0
vmacro07104 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 6.7e-08 62.8 124 33.9
BcaB01g05767 Brassica carinata HOM05D003944 ORTHO05D005521 1.9e-07 61.2 318 23.6
Psat5g022880 Pisum sativum HOM05D019765 ORTHO05D003537 3.3e-07 60.5 48 64.6
Thhalv10012781m.g Eutrema salsugineum HOM05D003944 ORTHO05D005521 7.4e-07 59.3 332 23.5
Aa31LG1G21200 Aethionema arabicum HOM05D003944 ORTHO05D005521 1.3e-06 58.5 332 22.9
Psat0s797g0200 Pisum sativum HOM05D002263 ORTHO05D003537 1.3e-06 58.5 44 63.6
Pp3c22_3710 Physcomitrium patens HOM05D003944 ORTHO05D005521 1.6e-06 58.2 361 23.3
THA.LOC104816412 Tarenaya hassleriana HOM05D003944 ORTHO05D005521 1.6e-06 58.2 328 23.5
BcaC03g12954 Brassica carinata HOM05D003944 ORTHO05D005521 4.8e-06 56.6 369 22.5
C02p01820 Brassica napus HOM05D003944 ORTHO05D005521 4.8e-06 56.6 369 22.5
BraA02t04801Z Brassica rapa HOM05D003944 ORTHO05D005521 4.8e-06 56.6 369 22.5
Hma1.2p1_0214F.1_g090820 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 4.8e-06 56.6 69 43.5


User provided reference genes

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