Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 0.0e+00 1141.3 753 100.0
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.3e-192 676.0 768 61.5
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 9.6e-176 621.3 760 64.9
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 3.2e-171 606.3 768 63.3
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 7.2e-171 605.1 760 62.2
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 7.4e-168 595.1 768 62.0
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.5e-165 587.4 765 62.1
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 2.2e-164 583.6 767 57.5
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 7.2e-163 578.6 775 60.0
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 7.2e-163 578.6 768 59.4
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.7e-162 576.6 756 58.2
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 1.0e-161 574.7 769 60.7
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.4e-161 574.3 766 65.0
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 2.3e-161 573.5 768 59.1
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 8.8e-161 571.6 776 60.6
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 2.0e-160 570.5 735 62.2
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 4.3e-160 569.3 772 62.2
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 5.9e-157 558.9 759 60.7
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.0e-156 558.1 765 59.7
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.7e-156 557.4 771 63.4
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 2.2e-156 557.0 780 61.5
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 5.0e-156 555.8 762 61.3
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 6.5e-156 555.4 735 61.4
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 7.2e-155 552.0 765 60.9
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.6e-154 550.8 735 60.3
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 2.3e-153 547.0 759 59.3
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 6.7e-153 545.4 763 55.4
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.7e-152 541.6 772 58.3
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.3e-151 541.2 739 50.3
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 2.2e-151 540.4 749 57.1
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.3e-151 538.9 766 58.6
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 8.2e-151 538.5 756 57.8
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.1e-150 538.1 767 61.8
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 3.1e-150 536.6 768 56.6
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.2e-149 534.6 765 60.3
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.5e-149 533.1 768 59.9
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 1.3e-148 531.2 741 59.2
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.3e-148 531.2 756 59.9
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 1.7e-148 530.8 764 56.4
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 5.0e-148 529.3 763 58.1
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.0e-148 529.3 736 60.1
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 1.9e-147 527.3 762 58.1
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 4.2e-147 526.2 769 58.1
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 7.2e-147 525.4 767 57.6
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.2e-146 524.6 767 57.6
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 4.7e-146 522.7 786 56.9
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 8.0e-146 521.9 771 57.8
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 3.3e-144 516.5 774 59.9
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 7.5e-144 515.4 764 53.0
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.3e-143 512.3 769 58.6
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 5.3e-142 509.2 797 58.2
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.2e-141 508.1 769 57.7
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.2e-141 508.1 770 56.9
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.6e-141 507.7 769 57.0
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 2.0e-141 507.3 753 57.9
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.0e-141 507.3 797 55.2
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.7e-141 506.9 770 57.7
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.9e-141 505.8 766 57.4
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.1e-139 501.5 760 55.1
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 3.2e-139 500.0 771 56.8
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.2e-138 498.0 767 57.1
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.7e-138 496.9 771 50.7
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 6.1e-138 495.7 771 60.6
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 2.0e-136 490.7 751 54.1
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.3e-135 488.0 773 52.7
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 1.7e-135 487.6 766 55.7
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.7e-135 487.6 831 54.6
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 8.3e-135 485.3 763 53.9
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 1.1e-134 485.0 767 57.6
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 9.1e-134 481.9 779 52.2
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.7e-133 480.3 770 54.2
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 3.5e-133 479.9 767 54.0
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.0e-132 478.4 761 53.2
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 1.0e-132 478.4 783 58.2
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 2.9e-132 476.9 768 50.1
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 3.8e-132 476.5 767 57.0
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 5.0e-132 476.1 773 56.4
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 5.0e-132 476.1 768 53.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.1e-131 474.9 768 52.3
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 8.0e-130 468.8 760 46.7
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.0e-129 468.4 766 57.3
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 8.8e-129 465.3 765 53.2
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.2e-128 464.9 767 57.1
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 7.5e-128 462.2 767 54.0
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.7e-127 461.1 768 53.5
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.7e-124 451.1 676 58.4
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.1e-123 448.4 777 54.3
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.2e-122 444.9 782 53.2
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 3.2e-118 430.3 770 52.9
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 3.2e-118 430.3 764 48.6
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.7e-117 427.2 771 50.1
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.1e-115 421.8 761 52.7
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 2.5e-115 420.6 770 50.9
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.3e-115 420.2 767 53.6
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 3.6e-114 416.8 762 53.3
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.4e-113 414.8 777 52.3
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 5.2e-113 412.9 723 46.7
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 9.8e-112 408.7 765 51.8
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 1.3e-111 408.3 774 51.7
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.7e-111 407.9 778 52.1
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 2.9e-111 407.1 766 49.0
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.9e-110 404.4 763 50.9
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 7.0e-110 402.5 760 46.3
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 9.2e-110 402.1 767 51.0
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 3.0e-108 397.1 755 50.5
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 3.0e-108 397.1 755 50.5
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 3.0e-108 397.1 755 50.5
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 1.9e-107 394.4 764 53.0
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.9e-107 394.4 765 51.6
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 9.5e-107 392.1 754 45.5
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 2.1e-106 391.0 761 48.6
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 6.4e-103 379.4 761 51.0
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.9e-102 377.9 776 49.7
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 5.4e-102 376.3 764 50.4
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.3e-100 371.7 733 52.4
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.1e-97 362.1 805 48.0
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 4.1e-94 350.1 704 45.5
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.3e-92 344.4 801 47.7
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 2.1e-90 337.8 810 48.3
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 5.2e-89 333.2 725 50.1
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 3.8e-79 300.4 288 60.4
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 1.1e-78 298.9 292 62.0
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 1.3e-71 275.4 589 51.3
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 9.3e-70 269.2 538 53.5
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.8e-66 256.9 752 40.8
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 1.2e-64 252.3 255 63.5
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.5e-64 250.4 249 63.9
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.4e-49 201.4 249 53.4
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 5.0e-47 193.7 218 55.5
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 4.2e-46 190.7 342 50.0
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.7e-45 187.2 156 70.5
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-43 180.6 292 45.9
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 2.2e-39 168.3 198 51.0
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.4e-38 165.6 285 45.3
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.2e-32 146.0 78 84.6
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 4.1e-25 120.9 107 53.3
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 7.7e-24 116.7 71 78.9
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 6.5e-23 113.6 88 62.5
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 1.6e-21 109.0 72 75.0
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.3e-15 89.4 115 41.7
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 3.6e-13 81.3 144 34.7
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.8e-12 79.0 115 43.5
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 2.3e-12 78.6 105 40.0
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 5.4e-09 67.4 142 40.8
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.2e-09 66.6 83 53.0
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 2.9e-07 61.6 74 43.2
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 2.9e-07 61.6 74 43.2
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 2.9e-07 61.6 74 43.2
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 3.8e-07 61.2 181 33.1
BcaB03g15618 Brassica carinata HOM05D004266 ORTHO05D005151 4.3e-06 57.8 70 37.1
BcaC08g45756 Brassica carinata HOM05D004266 ORTHO05D005151 4.3e-06 57.8 70 37.1
C06p35370 Brassica napus HOM05D004266 ORTHO05D005151 4.3e-06 57.8 70 37.1
BolC6t38642H Brassica oleracea HOM05D004266 ORTHO05D005151 4.3e-06 57.8 70 37.1
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 5.6e-06 57.4 74 32.4
PGSC0003DMG400010340 Solanum tuberosum HOM05D004266 ORTHO05D005151 5.6e-06 57.4 77 32.5
BcaB05g24678 Brassica carinata HOM05D004266 ORTHO05D005151 7.3e-06 57.0 70 37.1
CDE07G0240 Ceratophyllum demersum HOM05D004266 ORTHO05D005151 7.3e-06 57.0 77 35.1


User provided reference genes

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