Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0008860 Simmondsia chinensis HOM05D000216 ORTHO05D003638 3.6e-100 368.2 185 100.0
EL10As12g24015 Beta vulgaris HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
CAN.G386.26 Capsicum annuum HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
AUR62012105 Chenopodium quinoa HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 8.0e-15 84.7 41 97.6
Hma1.2p1_0414F.1_g147690 Hydrangea macrophylla HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
PSO548G0039 Papaver somniferum HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund03957 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund18044 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund27559 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund27611 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund27653 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund27865 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund27918 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund27995 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund28152 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund28178 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund28276 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund28388 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund28560 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund28651 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund28794 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund29068 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund29351 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund29741 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund29885 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund30206 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund30310 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund30432 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund30437 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund30852 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund31037 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
Hund31056 Selenicereus undatus HOM05D000216 ORTHO05D003638 8.0e-15 84.7 41 97.6
arahy.Tifrunner.gnm1.ann1.3KQL5I Arachis hypogaea HOM05D000216 ORTHO05D003518 1.4e-14 84.0 46 87.0
Ah.10g028520 Amaranthus hybridus HOM05D000216 ORTHO05D003638 1.8e-14 83.6 48 85.4
Potri.013G139080 Populus trichocarpa HOM05D000216 ORTHO05D003638 1.8e-14 83.6 43 88.4
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 1.8e-14 83.6 42 95.2
Solyc00g500335.1 Solanum lycopersicum HOM05D000216 ORTHO05D003638 1.8e-14 83.6 41 95.1
CAN.G201.5 Capsicum annuum HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
CDE02G3154 Ceratophyllum demersum HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
Migut.D01337 Erythranthe guttata HOM05D000216 ORTHO05D003638 2.3e-14 83.2 43 90.7
Lsat_1_v5_gn_2_1641 Lactuca sativa HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
Lsat_1_v5_gn_8_19261 Lactuca sativa HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
QL93p0837_0003 Quercus lobata HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
SalBow1G2877 Salvia bowleyana HOM05D000216 ORTHO05D003638 2.3e-14 83.2 43 90.7
SEGI_00749 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
SEGI_26801 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.3e-14 83.2 41 95.1
LjContig00489g0001571 Lotus japonicus HOM05D000216 ORTHO05D003638 3.0e-14 82.8 41 95.1
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.0e-14 82.8 41 92.7
DCAR_032472 Daucus carota HOM05D000216 ORTHO05D003638 4.0e-14 82.4 41 92.7
HanXRQChr00c0165g0572141 Helianthus annuus HOM05D000216 ORTHO05D003638 4.0e-14 82.4 41 95.1
HanXRQChr08g0210201 Helianthus annuus HOM05D000216 ORTHO05D003638 4.0e-14 82.4 41 95.1
HanXRQChr10g0282501 Helianthus annuus HOM05D000216 ORTHO05D003638 4.0e-14 82.4 41 95.1
HanXRQChr11g0326631 Helianthus annuus HOM05D000216 ORTHO05D003638 4.0e-14 82.4 41 95.1
HanXRQChr13g0425811 Helianthus annuus HOM05D000216 ORTHO05D003638 4.0e-14 82.4 41 95.1
HanXRQCPg0579821 Helianthus annuus HOM05D000216 ORTHO05D003638 4.0e-14 82.4 41 95.1
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 5.2e-14 82.0 41 92.7
Lj2C1238G11 Lonicera japonica HOM05D000216 ORTHO05D003638 5.2e-14 82.0 41 92.7
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 5.2e-14 82.0 41 92.7
Sed0006587 Sechium edule HOM05D000216 ORTHO05D003638 6.8e-14 81.6 43 88.4
Sed0012920 Sechium edule HOM05D000216 ORTHO05D003638 6.8e-14 81.6 43 88.4
Ah.10g027620 Amaranthus hybridus HOM05D000216 ORTHO05D003638 8.8e-14 81.3 41 92.7
Ah.10g027780 Amaranthus hybridus HOM05D000216 ORTHO05D003638 8.8e-14 81.3 41 92.7
Ciclev10013984m.g Citrus clementina HOM05D000216 ORTHO05D003638 8.8e-14 81.3 43 86.0
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 8.8e-14 81.3 54 74.1
HanXRQChr12g0380621 Helianthus annuus HOM05D000216 ORTHO05D003638 8.8e-14 81.3 41 92.7
arahy.Tifrunner.gnm1.ann1.49E3RC Arachis hypogaea HOM05D000216 ORTHO05D003638 1.2e-13 80.9 41 92.7
arahy.Tifrunner.gnm1.ann1.77R9Y6 Arachis hypogaea HOM05D000216 ORTHO05D003638 1.2e-13 80.9 41 92.7
arahy.Tifrunner.gnm1.ann1.KPH33C Arachis hypogaea HOM05D000216 ORTHO05D003638 1.2e-13 80.9 41 92.7
CSS0018496 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D003638 1.2e-13 80.9 41 92.7
HanXRQChr13g0425721 Helianthus annuus HOM05D000216 ORTHO05D003638 1.2e-13 80.9 41 92.7
RcHm_v2.0_CPg0502431 Rosa chinensis HOM05D000216 ORTHO05D003638 1.2e-13 80.9 41 92.7
Sed0015108 Sechium edule HOM05D000216 ORTHO05D003638 1.2e-13 80.9 41 92.7
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.2e-13 80.9 41 92.7
Sed0025462 Sechium edule HOM05D000216 ORTHO05D003638 1.2e-13 80.9 41 92.7
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.2e-13 80.9 41 92.7
CAN.G229.14 Capsicum annuum HOM05D000216 ORTHO05D003638 1.5e-13 80.5 41 92.7
HanXRQChr13g0415501 Helianthus annuus HOM05D000216 ORTHO05D003638 1.5e-13 80.5 41 92.7
LjContig00318g0018562 Lotus japonicus HOM05D000216 ORTHO05D003638 2.0e-13 80.1 41 90.2
Medtr4g051103 Medicago truncatula HOM05D000216 ORTHO05D003638 2.0e-13 80.1 41 90.2
Psat0s2754g0240 Pisum sativum HOM05D000216 ORTHO05D003638 2.0e-13 80.1 41 90.2
Psat0s2961g0080 Pisum sativum HOM05D000216 ORTHO05D003638 2.0e-13 80.1 41 90.2
Psat0s3650g0160 Pisum sativum HOM05D000216 ORTHO05D003638 2.0e-13 80.1 41 90.2
Psat1g003880 Pisum sativum HOM05D000216 ORTHO05D003638 2.0e-13 80.1 41 90.2
Psat6g219400 Pisum sativum HOM05D000216 ORTHO05D003638 2.0e-13 80.1 41 90.2
Psat7g033680 Pisum sativum HOM05D000216 ORTHO05D003638 2.0e-13 80.1 41 90.2
Sed0017816 Sechium edule HOM05D000216 ORTHO05D003518 2.0e-13 80.1 40 95.0
MD16G1263300 Malus domestica HOM05D000216 ORTHO05D003638 2.6e-13 79.7 41 87.8
Lalb_Chr07g0192171 Lupinus albus HOM05D000216 ORTHO05D003638 3.4e-13 79.3 41 90.2
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.4e-13 79.3 45 84.4
unitig_91.g26494 Utricularia gibba HOM05D000216 ORTHO05D003638 4.4e-13 79.0 43 86.0
Phvul.003G256800 Phaseolus vulgaris HOM05D000216 ORTHO05D003638 5.7e-13 78.6 41 90.2
PGR111G0049 Punica granatum HOM05D000216 ORTHO05D003638 5.7e-13 78.6 41 90.2
ATCG00150 Arabidopsis thaliana HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 90.2
arahy.Tifrunner.gnm1.ann1.TG7LSU Arachis hypogaea HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 90.2
BNapus_Darmor_BZH_scaffold_253p00040 Brassica napus HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 90.2
BolSC37t60770H Brassica oleracea HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 90.2
BolSC45t60878H Brassica oleracea HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 90.2
BraSC151t45693Z Brassica rapa HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 90.2
BraSC59t46515Z Brassica rapa HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 90.2
CARHR281900 Cardamine hirsuta HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 90.2
Mapoly0044s0072 Marchantia polymorpha HOM05D000216 ORTHO05D003638 9.8e-13 77.8 43 86.0
Medtr3g029550 Medicago truncatula HOM05D000216 ORTHO05D003638 9.8e-13 77.8 41 87.8
Medtr0002s0530 Medicago truncatula HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Psat7g038960 Pisum sativum HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 85.4
Zm00001eb435250 Zea mays HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Zm00001eb435460 Zea mays HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Zm00001eb435730 Zea mays HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Zm00001eb436810 Zea mays HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Zm00001eb437240 Zea mays HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Zm00001eb438330 Zea mays HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Zm00001eb441010 Zea mays HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Zm00001eb442740 Zea mays HOM05D000216 ORTHO05D003638 1.3e-12 77.4 41 87.8
Gorai.013G017800 Gossypium raimondii HOM05D000216 ORTHO05D003638 1.7e-12 77.0 41 90.2
Oeu028759.1 Olea europaea HOM05D000216 ORTHO05D003638 2.2e-12 76.6 41 85.4
Psat2g044440 Pisum sativum HOM05D000216 ORTHO05D003518 3.7e-12 75.9 41 85.4
arahy.Tifrunner.gnm1.ann1.T8J8BP Arachis hypogaea HOM05D000216 ORTHO05D003638 4.8e-12 75.5 38 94.7
MELO3C027395.2 Cucumis melo HOM05D000216 ORTHO05D003638 6.3e-12 75.1 41 87.8
Lsat_1_v5_gn_3_17360 Lactuca sativa HOM05D000216 ORTHO05D003638 6.3e-12 75.1 39 89.7
Medtr7g116680 Medicago truncatula HOM05D000216 ORTHO05D003638 8.3e-12 74.7 41 82.9
SGA_v2.0_scaffold95G28823 Striga asiatica HOM05D000216 ORTHO05D003638 1.1e-11 74.3 43 81.4
CAN.G517.19 Capsicum annuum HOM05D000216 ORTHO05D003638 1.4e-11 73.9 39 89.7
Eucgr.A00333 Eucalyptus grandis HOM05D000216 ORTHO05D003638 1.4e-11 73.9 43 79.1
Psat0s1586g0120 Pisum sativum HOM05D000216 ORTHO05D003638 1.4e-11 73.9 41 82.9
Psat0s2288g0040 Pisum sativum HOM05D000216 ORTHO05D003638 1.4e-11 73.9 41 80.5
Sed0022034 Sechium edule HOM05D000216 ORTHO05D003638 1.8e-11 73.6 43 81.4
Solyc00g500051.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.8e-11 73.6 36 97.2
Solyc00g500134.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.8e-11 73.6 36 97.2
Solyc00g500204.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.8e-11 73.6 36 97.2
Solyc00g500291.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.8e-11 73.6 36 97.2
Solyc00g500320.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 1.8e-11 73.6 36 97.2
Psat5g134680 Pisum sativum HOM05D000216 ORTHO05D003638 3.1e-11 72.8 47 78.7
CAN.G1185.18 Capsicum annuum HOM05D000216 ORTHO05D003638 4.1e-11 72.4 39 89.7
CAN.G993.7 Capsicum annuum HOM05D000216 ORTHO05D003638 5.4e-11 72.0 40 82.5
Migut.L00411 Erythranthe guttata HOM05D000216 ORTHO05D003638 5.4e-11 72.0 37 94.6
Hund20346 Selenicereus undatus HOM05D000216 ORTHO05D003638 7.0e-11 71.6 40 85.0
MD16G1100100 Malus domestica HOM05D000216 ORTHO05D003638 2.7e-10 69.7 41 85.4
Gohir.D08G103720 Gossypium hirsutum HOM05D000216 ORTHO05D003518 3.5e-10 69.3 38 86.8
Nitab4.5_0002175g0020 Nicotiana tabacum HOM05D000216 ORTHO05D003638 3.5e-10 69.3 57 64.9
arahy.Tifrunner.gnm1.ann1.M78D68 Arachis hypogaea HOM05D000216 ORTHO05D003638 7.7e-10 68.2 40 82.5
Gohir.A05G086000 Gossypium hirsutum HOM05D000216 ORTHO05D003638 1.0e-09 67.8 37 89.2
Manes.13G021650 Manihot esculenta HOM05D000216 ORTHO05D003638 1.0e-09 67.8 34 91.2
Oeu022568.1 Olea europaea HOM05D000216 ORTHO05D003638 1.0e-09 67.8 39 84.6
BolSC45t60935H Brassica oleracea HOM05D000216 ORTHO05D003638 2.9e-09 66.2 34 94.1
Gorai.001G035800 Gossypium raimondii HOM05D000216 ORTHO05D003638 2.9e-09 66.2 38 84.2
Hund15942 Selenicereus undatus HOM05D000216 ORTHO05D003638 2.9e-09 66.2 36 91.7
CAN.G63.18 Capsicum annuum HOM05D000216 ORTHO05D003638 3.8e-09 65.9 37 86.5
HanXRQChr00c0601g0576511 Helianthus annuus HOM05D000216 ORTHO05D003638 8.6e-09 64.7 33 93.9
SMO086G0032 Selaginella moellendorffii HOM05D000216 ORTHO05D003638 8.6e-09 64.7 41 78.0
Nn2g15011 Nelumbo nucifera HOM05D000216 ORTHO05D003638 1.9e-08 63.5 34 88.2
Solyc12g062630.1 Solanum lycopersicum HOM05D000216 ORTHO05D003518 4.2e-08 62.4 35 82.9
Gohir.A10G169433 Gossypium hirsutum HOM05D000216 ORTHO05D003638 9.5e-08 61.2 29 100.0
Nitab4.5_0001015g0070 Nicotiana tabacum HOM05D000216 ORTHO05D003638 9.5e-08 61.2 29 100.0
Gohir.D07G034200 Gossypium hirsutum HOM05D000216 ORTHO05D003638 1.2e-07 60.8 31 96.8
Solyc10g044560.1 Solanum lycopersicum HOM05D000216 ORTHO05D003638 1.2e-07 60.8 37 78.4
Solyc01g017520.1 Solanum lycopersicum HOM05D000216 ORTHO05D003638 2.1e-07 60.1 34 85.3
MELO3C000995.2 Cucumis melo HOM05D000216 ORTHO05D003638 2.8e-07 59.7 28 100.0
TPR.G20776 Trifolium pratense HOM05D000216 ORTHO05D003638 1.0e-06 57.8 41 68.3
BolSC29t60571H Brassica oleracea HOM05D000216 ORTHO05D003638 1.4e-06 57.4 30 90.0
Gohir.D02G023550 Gossypium hirsutum HOM05D000216 ORTHO05D003638 1.8e-06 57.0 33 75.8
Gorai.005G029600 Gossypium raimondii HOM05D000216 ORTHO05D003638 1.8e-06 57.0 33 75.8
HanXRQChr00c0300g0573211 Helianthus annuus HOM05D000216 ORTHO05D003638 1.8e-06 57.0 34 85.3
HanXRQChr14g0427991 Helianthus annuus HOM05D000216 ORTHO05D003638 1.8e-06 57.0 27 100.0
Solyc07g021270.1 Solanum lycopersicum HOM05D000216 ORTHO05D003638 1.8e-06 57.0 41 68.3
Nitab4.5_0001140g0200 Nicotiana tabacum HOM05D000216 ORTHO05D003638 3.0e-06 56.2 33 84.8


User provided reference genes

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