Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 2059.6 1053 100.0
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1715.7 1054 84.2
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1693.7 1047 82.9
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1660.2 1056 81.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1659.8 1053 81.3
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1655.6 1057 81.3
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1655.2 1025 82.9
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1652.5 1053 80.8
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1650.2 1024 82.6
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1647.5 1043 81.1
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1642.9 1062 80.4
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1641.3 1054 80.7
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1639.8 1062 80.3
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1637.1 1056 80.4
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1636.7 1053 80.4
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1635.9 1053 81.0
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1635.5 1054 79.6
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1634.8 1057 80.1
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1633.6 1050 80.5
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1632.5 1088 78.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1632.5 1055 79.7
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1631.7 1053 79.8
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1056 79.9
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1049 80.6
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1054 79.5
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1629.8 1054 79.6
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1629.4 1056 79.9
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1629.0 1049 80.6
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1627.5 1054 79.7
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1624.4 1054 79.0
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1622.1 1024 81.3
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1620.9 1056 79.8
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1619.8 1056 79.6
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1610.1 1073 78.4
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1602.8 1054 78.7
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1601.3 1055 79.2
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1600.9 1072 78.7
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1597.4 1055 79.1
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1597.4 1053 78.9
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1596.6 1153 73.2
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1596.3 1055 78.3
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1054 77.9
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1589.3 1068 78.1
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1587.8 1054 78.3
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1587.0 1054 77.4
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1584.7 1055 78.5
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1583.9 1081 76.7
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1583.2 1057 78.5
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1056 77.9
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1579.7 1072 77.2
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1577.0 1053 77.5
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1570.1 1054 76.9
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1054 76.8
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1567.4 1024 78.8
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1055 77.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1040 77.6
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1562.7 1063 76.6
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1557.3 1060 76.8
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1056 77.4
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1060 76.6
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1553.9 1055 76.6
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1553.5 1058 76.7
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1552.0 1054 76.0
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1055 76.1
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1541.9 1059 76.4
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1054 75.8
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1539.6 1058 75.8
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1539.2 1053 75.7
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1538.9 1054 75.6
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1538.9 1060 75.7
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1535.8 1058 75.1
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1535.8 1051 75.9
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1053 74.7
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1533.9 1063 75.4
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1530.8 1057 75.1
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1061 75.7
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1525.8 1054 76.1
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1525.8 1024 76.1
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1523.8 1059 74.7
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1518.4 1051 75.5
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1517.3 1061 75.4
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1517.3 1059 74.6
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1517.3 1062 75.4
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1516.9 1054 74.8
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1516.1 1063 74.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1516.1 1063 74.2
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1515.0 1057 74.2
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1513.0 1057 74.1
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1507.3 1060 74.2
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1506.1 1061 75.2
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1504.6 1061 75.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1502.3 1056 74.1
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1104 72.6
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1490.7 1068 73.0
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1489.9 1025 74.7
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1489.9 1102 72.5
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1485.7 1059 72.9
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1483.0 1052 73.7
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1475.3 1070 73.2
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1471.8 1059 72.4
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1460.7 1024 73.1
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1425.6 1026 71.7
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1398.3 1030 72.0
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1375.9 1055 70.7
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1364.0 945 73.3
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1346.3 967 72.0
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1345.1 1054 68.1
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1306.2 967 69.3
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1291.6 1045 65.6
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1279.2 1022 67.2
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1275.8 1030 64.0
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1220.3 825 75.8
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1139.4 761 78.4
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1118.2 1028 57.6
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1088.6 1030 58.2
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 5.6e-307 1057.7 1036 54.3
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 5.8e-304 1047.7 1040 55.2
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 6.5e-295 1017.7 628 83.1
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 4.8e-290 1001.5 720 69.7
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.4e-289 999.2 718 69.9
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.2e-282 976.1 1024 54.4
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 2.4e-265 919.5 619 75.9
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-264 917.1 976 55.1
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 6.8e-260 901.4 1047 50.4
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-256 889.4 1055 50.2
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.8e-252 876.7 1040 49.8
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.0e-244 849.4 549 77.8
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 5.4e-233 812.0 479 85.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.5e-214 750.0 447 85.7
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.3e-202 711.1 1032 44.2
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 7.4e-190 668.7 437 76.2
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.0e-183 648.3 399 80.7
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-180 638.3 1029 41.1
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 9.7e-174 615.1 386 81.1
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.8e-173 613.6 481 66.7
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 2.0e-171 607.4 504 61.1
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 9.1e-164 582.0 1078 35.8
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.7e-157 561.2 463 64.4
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.4e-148 530.8 422 65.6
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-144 518.5 382 70.2
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.8e-143 512.7 367 71.1
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.8e-143 512.7 367 71.1
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-135 487.6 372 68.8
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 5.7e-134 483.0 514 57.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.1e-132 478.8 319 74.3
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-125 454.9 586 46.1
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 8.3e-125 452.6 578 48.8
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.3e-122 445.3 1080 32.3
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 2.0e-115 421.4 666 41.4
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.6e-107 395.2 291 69.8
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 6.2e-104 383.3 288 70.1
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 1.7e-90 338.6 195 85.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.8e-88 331.3 291 62.9
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.8e-86 323.6 516 42.1
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 3.8e-77 294.3 514 37.9
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-71 276.2 412 43.9
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 5.3e-71 273.9 408 44.1
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.4e-68 265.8 185 74.6
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.9e-61 241.5 135 85.9
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-58 232.3 307 46.9
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.4e-55 221.9 241 55.6
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 4.6e-51 207.6 138 78.3
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.4e-50 206.1 162 69.1
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-49 201.4 232 54.3
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.1e-44 186.4 191 49.7
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 4.2e-44 184.5 127 74.0
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.0e-42 179.9 143 67.8
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 8.0e-35 153.7 176 54.5
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.4e-34 152.9 253 41.5
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-33 149.8 128 63.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.9e-30 137.5 214 42.5
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 4.2e-28 131.3 92 76.1
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 2.6e-25 122.1 271 35.4
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 3.4e-25 121.7 88 67.0
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 7.8e-14 84.0 55 78.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 5.6e-12 77.8 75 46.7
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 1.4e-10 73.2 115 39.1
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 5.2e-10 71.2 62 58.1
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 8.9e-10 70.5 49 67.3
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 3.7e-08 65.1 86 46.5
Haze_26226 Corylus avellana HOM05D004243 ORTHO05D005018 3.5e-06 58.5 186 29.0


User provided reference genes

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