Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 1.5e-74 282.7 141 100.0
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 1.4e-35 153.3 151 57.6
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 2.1e-31 139.4 175 50.3
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 2.3e-30 136.0 183 45.9
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 8.7e-30 134.0 80 80.0
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 1.1e-29 133.7 168 48.8
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 1.1e-29 133.7 168 48.8
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 3.3e-29 132.1 168 48.2
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 4.3e-29 131.7 80 78.8
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 9.7e-29 130.6 168 48.8
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 2.8e-28 129.0 80 76.2
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 4.8e-28 128.3 177 46.3
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 6.3e-28 127.9 80 73.8
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 6.3e-28 127.9 80 75.0
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 8.2e-28 127.5 80 73.8
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 8.2e-28 127.5 95 66.3
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.1e-27 127.1 80 73.8
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 1.4e-27 126.7 80 75.0
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.4e-27 126.7 80 75.0
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 1.4e-27 126.7 80 75.0
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.8e-27 126.3 80 75.0
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 1.8e-27 126.3 80 75.0
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 1.8e-27 126.3 169 47.3
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 2.4e-27 125.9 120 57.5
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 2.4e-27 125.9 80 75.0
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 3.1e-27 125.6 91 67.0
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 4.1e-27 125.2 80 73.8
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 5.3e-27 124.8 80 75.0
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 5.3e-27 124.8 80 75.0
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 5.3e-27 124.8 80 73.8
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 5.3e-27 124.8 80 73.8
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 5.3e-27 124.8 80 72.5
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 6.9e-27 124.4 80 70.0
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 6.9e-27 124.4 80 73.8
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 9.1e-27 124.0 80 72.5
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 9.1e-27 124.0 80 72.5
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 9.1e-27 124.0 80 73.8
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 1.5e-26 123.2 80 73.8
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 1.5e-26 123.2 80 73.8
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 1.5e-26 123.2 80 73.8
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.5e-26 123.2 80 72.5
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 1.5e-26 123.2 80 72.5
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 2.0e-26 122.9 80 71.2
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 2.0e-26 122.9 79 70.9
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 2.0e-26 122.9 80 71.2
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 2.6e-26 122.5 80 72.5
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 2.6e-26 122.5 80 75.0
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 2.6e-26 122.5 81 70.4
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 3.4e-26 122.1 80 73.8
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 3.4e-26 122.1 83 71.1
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 3.4e-26 122.1 175 45.7
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 4.5e-26 121.7 80 72.5
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 4.5e-26 121.7 80 70.0
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 5.9e-26 121.3 80 73.8
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 7.7e-26 120.9 80 71.2
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 1.0e-25 120.6 175 44.6
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 1.0e-25 120.6 176 44.9
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 1.0e-25 120.6 80 71.2
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.3e-25 120.2 92 65.2
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 1.3e-25 120.2 80 70.0
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 1.3e-25 120.2 80 70.0
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 1.3e-25 120.2 80 71.2
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 1.7e-25 119.8 165 44.8
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.7e-25 119.8 80 70.0
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.7e-25 119.8 175 44.0
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 2.2e-25 119.4 80 68.8
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 2.2e-25 119.4 161 46.0
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 2.2e-25 119.4 80 73.8
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 2.2e-25 119.4 80 70.0
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 2.9e-25 119.0 80 71.2
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 2.9e-25 119.0 80 68.8
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 2.9e-25 119.0 80 70.0
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 3.8e-25 118.6 80 70.0
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 3.8e-25 118.6 80 68.8
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 5.0e-25 118.2 79 72.2
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 5.0e-25 118.2 80 70.0
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 6.5e-25 117.9 170 44.1
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 6.5e-25 117.9 80 70.0
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 6.5e-25 117.9 80 70.0
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 6.5e-25 117.9 80 68.8
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 8.5e-25 117.5 80 70.0
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 8.5e-25 117.5 80 68.8
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 8.5e-25 117.5 80 68.8
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 2.5e-24 115.9 95 62.1
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 7.2e-24 114.4 80 67.5
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 7.2e-24 114.4 80 68.8
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 9.4e-24 114.0 156 46.8
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 9.4e-24 114.0 81 69.1
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 1.6e-23 113.2 80 66.2
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 4.6e-23 111.7 165 43.0
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 7.9e-23 110.9 80 65.0
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 3.9e-22 108.6 80 68.8
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 8.8e-22 107.5 80 63.8
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 8.8e-22 107.5 80 62.5
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 7.4e-21 104.4 91 59.3
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 1.7e-20 103.2 71 70.4
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 8.2e-20 100.9 65 70.8
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 5.3e-19 98.2 84 56.0
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 6.9e-19 97.8 80 61.2
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.5e-18 96.7 133 44.4
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.5e-18 96.7 115 47.8
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 1.4e-16 90.1 80 51.2
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 7.9e-15 84.3 80 51.2
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 2.3e-14 82.8 62 62.9
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 6.7e-14 81.3 90 50.0
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 7.4e-13 77.8 79 45.6
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 4.8e-12 75.1 41 90.2
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 6.3e-12 74.7 47 74.5
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 1.8e-11 73.2 74 47.3
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.6e-10 69.3 38 86.8
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 1.9e-08 63.2 39 82.1
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.6e-07 60.1 39 76.9
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.0e-06 55.5 39 71.8


User provided reference genes

Program Settings