Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008530 Simmondsia chinensis HOM05D002899 ORTHO05D003850 1.1e-96 356.7 181 100.0
Sc06g0010130 Simmondsia chinensis HOM05D002899 ORTHO05D003850 8.4e-94 347.1 180 97.2
Sc11g0002190 Simmondsia chinensis HOM05D002899 ORTHO05D003850 2.7e-92 342.0 180 96.7
TAR633G0361 Trochodendron aralioides HOM05D002899 ORTHO05D003850 7.7e-63 244.2 181 68.5
Sc09g0008570 Simmondsia chinensis HOM05D002899 ORTHO05D003850 8.0e-60 234.2 123 98.4
TAR375G0529 Trochodendron aralioides HOM05D002899 ORTHO05D003850 1.8e-59 233.0 181 65.7
AUR62024879 Chenopodium quinoa HOM05D002899 ORTHO05D003850 5.2e-59 231.5 180 66.1
EL10Ac2g02592 Beta vulgaris HOM05D002899 ORTHO05D003850 1.5e-58 229.9 180 66.1
AUR62030668 Chenopodium quinoa HOM05D002899 ORTHO05D003850 1.5e-58 229.9 180 65.6
Oeu028990.1 Olea europaea HOM05D002899 ORTHO05D003850 2.0e-58 229.6 180 64.4
Actinidia08787 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.8e-57 225.7 181 63.0
Hma1.2p1_1059F.1_g253030 Hydrangea macrophylla HOM05D002899 ORTHO05D003850 3.7e-57 225.3 180 63.9
Ah.12g064150 Amaranthus hybridus HOM05D002899 ORTHO05D003850 8.3e-57 224.2 180 64.4
DCAR_022992 Daucus carota HOM05D002899 ORTHO05D003850 1.1e-56 223.8 180 63.3
Lju926C12T4 Lonicera japonica HOM05D002899 ORTHO05D003850 1.4e-56 223.4 181 63.0
Nitab4.5_0009225g0010 Nicotiana tabacum HOM05D002899 ORTHO05D003850 2.4e-56 222.6 181 63.0
Solyc10g005990.4 Solanum lycopersicum HOM05D002899 ORTHO05D003850 3.1e-56 222.2 181 63.5
CAN.G492.37 Capsicum annuum HOM05D002899 ORTHO05D003850 4.1e-56 221.9 181 61.9
Lj5P331T27 Lonicera japonica HOM05D002899 ORTHO05D003850 4.1e-56 221.9 181 63.5
Sopen10g001950 Solanum pennellii HOM05D002899 ORTHO05D003850 4.1e-56 221.9 181 63.0
PGSC0003DMG400014409 Solanum tuberosum HOM05D002899 ORTHO05D003850 4.1e-56 221.9 181 63.0
Prupe.5G048700 Prunus persica HOM05D002899 ORTHO05D003850 7.0e-56 221.1 183 60.1
Lj9C24T10 Lonicera japonica HOM05D002899 ORTHO05D003850 9.1e-56 220.7 181 63.5
Lj9P219T21 Lonicera japonica HOM05D002899 ORTHO05D003850 2.0e-55 219.5 180 62.2
Peaxi162Scf01026g00001 Petunia axillaris HOM05D002899 ORTHO05D003850 2.0e-55 219.5 181 61.9
MSTRG.8559 Avicennia marina HOM05D002899 ORTHO05D003850 2.7e-55 219.2 180 62.2
SGA_v2.0_scaffold39G15236 Striga asiatica HOM05D002899 ORTHO05D003850 2.7e-55 219.2 180 61.7
Migut.F00929 Erythranthe guttata HOM05D002899 ORTHO05D003850 5.9e-55 218.0 180 61.1
Rhsim06G0232100 Rhododendron simsii HOM05D002899 ORTHO05D003850 5.9e-55 218.0 179 61.5
Ah.12g063970 Amaranthus hybridus HOM05D002899 ORTHO05D003850 7.7e-55 217.6 180 63.3
Sabra13G0065200 Salix brachista HOM05D002899 ORTHO05D003850 7.7e-55 217.6 179 60.3
TWI38G1169 Tripterygium wilfordii HOM05D002899 ORTHO05D003850 7.7e-55 217.6 179 60.9
CiPaw.05G210800 Carya illinoinensis HOM05D002899 ORTHO05D003850 1.0e-54 217.2 180 58.9
CSS0044416 Camellia sinensis var. sinensis HOM05D002899 ORTHO05D003850 1.3e-54 216.9 180 61.1
MBI02_g25679_MAGBIO Magnolia biondii HOM05D002899 ORTHO05D003850 1.3e-54 216.9 180 62.2
Glyma.02G073100 Glycine max HOM05D002899 ORTHO05D003850 2.9e-54 215.7 180 62.2
Nn3g21896 Nelumbo nucifera HOM05D002899 ORTHO05D003850 2.9e-54 215.7 180 60.6
Potri.013G076000 Populus trichocarpa HOM05D002899 ORTHO05D003850 2.9e-54 215.7 179 59.2
Eucgr.G00845 Eucalyptus grandis HOM05D002899 ORTHO05D003850 3.8e-54 215.3 180 61.1
MD15G1445100 Malus domestica HOM05D002899 ORTHO05D003850 3.8e-54 215.3 182 58.8
Cc05_g11170 Coffea canephora HOM05D002899 ORTHO05D003850 5.0e-54 214.9 180 61.7
Prupe.1G587200 Prunus persica HOM05D002899 ORTHO05D003850 6.5e-54 214.5 183 57.9
MD08G1250100 Malus domestica HOM05D002899 ORTHO05D003850 1.9e-53 213.0 182 57.7
unitig_21.g20691 Utricularia gibba HOM05D002899 ORTHO05D003850 3.2e-53 212.2 180 60.6
Manes.09G130600 Manihot esculenta HOM05D002899 ORTHO05D003850 7.2e-53 211.1 179 58.1
CDE05G1238 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.2e-52 210.3 180 58.9
MSTRG.22435 Avicennia marina HOM05D002899 ORTHO05D003850 1.6e-52 209.9 180 59.4
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 1.6e-52 209.9 180 58.9
Aqoxy2G00924 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.1e-52 209.5 178 58.4
Duzib128G1532 Durio zibethinus HOM05D002899 ORTHO05D003850 2.1e-52 209.5 179 59.2
Cfa016110 Carpinus fangiana HOM05D002899 ORTHO05D003850 2.7e-52 209.1 180 58.3
RcHm_v2.0_Chr7g0218481 Rosa chinensis HOM05D002899 ORTHO05D003850 2.7e-52 209.1 182 57.7
Lj5P331T31 Lonicera japonica HOM05D002899 ORTHO05D003850 3.6e-52 208.8 173 63.6
COL.COLO4_33467 Corchorus olitorius HOM05D002899 ORTHO05D003850 4.7e-52 208.4 179 58.7
Glyma.16G154400 Glycine max HOM05D002899 ORTHO05D003850 4.7e-52 208.4 180 60.0
VMungo0464G0921 Vigna mungo HOM05D002899 ORTHO05D003850 8.0e-52 207.6 180 58.3
CsaV3_2G035840 Cucumis sativus L. HOM05D002899 ORTHO05D003850 1.4e-51 206.8 180 58.3
Sed0007587 Sechium edule HOM05D002899 ORTHO05D003850 1.8e-51 206.5 180 57.2
ClCG02G007900 Citrullus lanatus HOM05D002899 ORTHO05D003850 2.3e-51 206.1 180 58.3
Lsat_1_v5_gn_9_37500 Lactuca sativa HOM05D002899 ORTHO05D003850 2.3e-51 206.1 180 60.6
PSO339G6595 Papaver somniferum HOM05D002899 ORTHO05D003850 4.0e-51 205.3 178 59.6
PSO384G0661 Papaver somniferum HOM05D002899 ORTHO05D003850 4.0e-51 205.3 178 59.6
Sed0003802 Sechium edule HOM05D002899 ORTHO05D003850 4.0e-51 205.3 180 58.3
MELO3C024757.2 Cucumis melo HOM05D002899 ORTHO05D003850 5.2e-51 204.9 180 58.3
Sabra19G0053900 Salix brachista HOM05D002899 ORTHO05D003850 5.2e-51 204.9 179 56.4
ECA247G1085 Erigeron canadensis HOM05D002899 ORTHO05D003850 6.8e-51 204.5 180 60.0
Thecc.05G227100 Theobroma cacao HOM05D002899 ORTHO05D003850 8.8e-51 204.1 179 58.7
FvH4_5g27320 Fragaria vesca HOM05D002899 ORTHO05D003850 1.2e-50 203.8 182 56.0
FAN18G3509 Fragaria x ananassa HOM05D002899 ORTHO05D003850 1.2e-50 203.8 182 56.0
Lj1g0022689 Lotus japonicus HOM05D002899 ORTHO05D003850 1.2e-50 203.8 180 57.8
Phvul.004G082100 Phaseolus vulgaris HOM05D002899 ORTHO05D003850 1.5e-50 203.4 180 57.2
Atru.chr12.1814 Acer truncatum HOM05D002899 ORTHO05D003850 2.0e-50 203.0 180 56.7
Atru.chr6.914 Acer truncatum HOM05D002899 ORTHO05D003850 5.7e-50 201.4 180 56.1
PGR142G0302 Punica granatum HOM05D002899 ORTHO05D003850 9.8e-50 200.7 179 56.4
Gorai.007G247300 Gossypium raimondii HOM05D002899 ORTHO05D003850 1.7e-49 199.9 179 58.1
HanXRQChr15g0463941 Helianthus annuus HOM05D002899 ORTHO05D003850 1.7e-49 199.9 180 58.3
FAN08G1317 Fragaria x ananassa HOM05D002899 ORTHO05D003850 2.2e-49 199.5 182 54.9
Potri.019G043200 Populus trichocarpa HOM05D002899 ORTHO05D003850 2.2e-49 199.5 180 55.6
Gohir.A11G221200 Gossypium hirsutum HOM05D002899 ORTHO05D003850 2.8e-49 199.1 179 58.1
Ca_23166_v3 Cicer arietinum L. HOM05D002899 ORTHO05D003850 3.7e-49 198.7 180 56.7
Gohir.D11G234700 Gossypium hirsutum HOM05D002899 ORTHO05D003850 3.7e-49 198.7 179 58.1
TPR.G2005 Trifolium pratense HOM05D002899 ORTHO05D003850 1.1e-48 197.2 180 54.4
Psat4g207720 Pisum sativum HOM05D002899 ORTHO05D003850 1.4e-48 196.8 180 57.2
arahy.Tifrunner.gnm1.ann1.T623PT Arachis hypogaea HOM05D002899 ORTHO05D003850 2.4e-48 196.1 179 57.0
Rhsim03G0225400 Rhododendron simsii HOM05D002899 ORTHO05D003850 2.4e-48 196.1 179 55.3
AUR62014872 Chenopodium quinoa HOM05D002899 ORTHO05D003850 3.1e-48 195.7 180 55.0
Ciclev10030682m.g Citrus clementina HOM05D002899 ORTHO05D003850 5.4e-48 194.9 178 55.6
Medtr8g010350 Medicago truncatula HOM05D002899 ORTHO05D003850 7.0e-48 194.5 180 55.0
SHI02598 Sapria himalayana HOM05D002899 ORTHO05D003850 7.0e-48 194.5 179 53.6
TPR.G27642 Trifolium pratense HOM05D002899 ORTHO05D003850 7.0e-48 194.5 184 55.4
Lalb_Chr16g0385381 Lupinus albus HOM05D002899 ORTHO05D003850 2.7e-47 192.6 180 55.0
Lalb_Chr09g0328871 Lupinus albus HOM05D002899 ORTHO05D003850 1.7e-46 189.9 180 53.9
GSVIVG01024262001 Vitis vinifera HOM05D002899 ORTHO05D003850 2.9e-46 189.1 180 56.1
THA.LOC104823791 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 1.1e-45 187.2 180 52.8
AL1G29240 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 2.8e-44 182.6 180 52.8
SEGI_23967 Sequoiadendron giganteum HOM05D002899 ORTHO05D003850 1.8e-43 179.9 184 50.5
ATR1098G071 Amborella trichopoda HOM05D002899 ORTHO05D003850 2.3e-43 179.5 184 51.6
CARHR017600 Cardamine hirsuta HOM05D002899 ORTHO05D003850 5.2e-43 178.3 179 51.4
TPR.G6614 Trifolium pratense HOM05D002899 ORTHO05D003850 6.8e-43 177.9 181 51.4
Carub.0001s1679 Capsella rubella HOM05D002899 ORTHO05D003850 4.4e-42 175.3 180 50.6
Thhalv10006789m.g Eutrema salsugineum HOM05D002899 ORTHO05D003850 1.3e-41 173.7 179 50.3
Sp1g15190 Schrenkiella parvula HOM05D002899 ORTHO05D003850 1.3e-41 173.7 179 51.4
THA.LOC104805726 Tarenaya hassleriana HOM05D002899 ORTHO05D003850 1.3e-41 173.7 180 49.4
AT1G17070 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 2.2e-41 172.9 180 51.1
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 2.2e-41 172.9 179 49.7
BcaC07g41444 Brassica carinata HOM05D002899 ORTHO05D003850 8.3e-41 171.0 179 51.4
HanXRQChr10g0291501 Helianthus annuus HOM05D002899 ORTHO05D003850 1.1e-40 170.6 180 50.6
C08p44090 Brassica napus HOM05D002899 ORTHO05D003850 1.4e-40 170.2 179 51.4
BolC8t51957H Brassica oleracea HOM05D002899 ORTHO05D003850 1.4e-40 170.2 179 51.4
BraA09t41433Z Brassica rapa HOM05D002899 ORTHO05D003850 1.4e-40 170.2 179 51.4
A09p60630 Brassica napus HOM05D002899 ORTHO05D003850 1.8e-40 169.9 179 51.4
AUR62031081 Chenopodium quinoa HOM05D002899 ORTHO05D003850 2.4e-40 169.5 178 51.1
Aa31LG11G5630 Aethionema arabicum HOM05D002899 ORTHO05D003850 3.1e-40 169.1 179 48.6
Cpa.g.sc43.153 Carica papaya HOM05D002899 ORTHO05D003850 1.2e-39 167.2 138 60.1
Oeu027900.2 Olea europaea HOM05D002899 ORTHO05D003850 4.5e-39 165.2 180 48.9
Lsat_1_v5_gn_9_37520 Lactuca sativa HOM05D002899 ORTHO05D003850 1.3e-38 163.7 181 50.8
arahy.Tifrunner.gnm1.ann1.2Q8IWK Arachis hypogaea HOM05D002899 ORTHO05D003850 2.3e-38 162.9 139 57.6
arahy.Tifrunner.gnm1.ann1.S0X35P Arachis hypogaea HOM05D002899 ORTHO05D003850 2.9e-38 162.5 139 58.3
FAN04G0489 Fragaria x ananassa HOM05D002899 ORTHO05D003850 8.6e-38 161.0 182 49.5
Zm00001eb135930 Zea mays HOM05D002899 ORTHO05D003850 7.3e-37 157.9 182 45.1
Os12g0615800 Oryza sativa ssp. japonica HOM05D002899 ORTHO05D003850 9.5e-37 157.5 180 45.0
Manes.09G098002 Manihot esculenta HOM05D002899 ORTHO05D003850 2.8e-36 156.0 124 62.1
Mapoly0121s0014 Marchantia polymorpha HOM05D002899 ORTHO05D003850 2.8e-36 156.0 186 46.8
AL4G40710 Arabidopsis lyrata HOM05D002899 ORTHO05D003850 1.2e-34 150.6 178 43.8
BcaC07g41394 Brassica carinata HOM05D002899 ORTHO05D003850 1.2e-34 150.6 160 51.2
Mapoly0085s0035 Marchantia polymorpha HOM05D002899 ORTHO05D003850 1.5e-34 150.2 186 44.6
Peaxi162Scf00017g01725 Petunia axillaris HOM05D002899 ORTHO05D003850 1.5e-34 150.2 183 50.8
BcaC05g25671 Brassica carinata HOM05D002899 ORTHO05D003850 2.2e-33 146.4 180 45.6
BcaB02g06683 Brassica carinata HOM05D002899 ORTHO05D003850 1.1e-32 144.1 180 44.4
arahy.Tifrunner.gnm1.ann1.VWPR3S Arachis hypogaea HOM05D002899 ORTHO05D003850 9.2e-32 141.0 122 57.4
CDE02G0573 Ceratophyllum demersum HOM05D002899 ORTHO05D003850 1.6e-31 140.2 124 55.6
QL03p062749 Quercus lobata HOM05D002899 ORTHO05D003850 2.0e-31 139.8 157 49.0
AT2G42330 Arabidopsis thaliana HOM05D002899 ORTHO05D003850 3.5e-31 139.0 178 41.6
CARHR137380 Cardamine hirsuta HOM05D002899 ORTHO05D003850 1.7e-30 136.7 179 40.2
Pp3c22_1760 Physcomitrium patens HOM05D002899 ORTHO05D003850 6.6e-30 134.8 180 37.8
Pp3c19_6430 Physcomitrium patens HOM05D002899 ORTHO05D003850 8.6e-30 134.4 180 37.8
AagrBONN_evm.TU.Sc2ySwM_340.341 Anthoceros agrestis HOM05D002899 ORTHO05D003850 1.1e-29 134.0 186 36.6
Aqoxy6G01663 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 9.5e-29 131.0 122 50.0
Dinv36250 Davidia involucrata HOM05D002899 ORTHO05D003850 1.6e-28 130.2 181 48.1
SMO165G0034 Selaginella moellendorffii HOM05D002899 ORTHO05D003850 2.8e-28 129.4 180 37.8
QL03p062784 Quercus lobata HOM05D002899 ORTHO05D003850 1.5e-26 123.6 167 41.9
QL03p066723 Quercus lobata HOM05D002899 ORTHO05D003850 1.5e-26 123.6 167 41.9
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 3.7e-25 119.0 179 42.5
COL.COLO4_32217 Corchorus olitorius HOM05D002899 ORTHO05D003850 3.7e-25 119.0 177 44.1
CBR_g50354 Chara braunii HOM05D002899 ORTHO05D003850 6.4e-25 118.2 184 34.8
TPR.G9789 Trifolium pratense HOM05D002899 ORTHO05D003850 1.4e-24 117.1 105 52.4
arahy.Tifrunner.gnm1.ann1.01UMM0 Arachis hypogaea HOM05D002899 ORTHO05D003850 4.1e-24 115.5 146 48.6
TPR.G29541 Trifolium pratense HOM05D002899 ORTHO05D003850 4.1e-24 115.5 109 50.5
DCAR_011062 Daucus carota HOM05D002899 ORTHO05D003850 5.4e-24 115.2 105 55.2
Aqoxy1G02234 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 2.3e-22 109.8 143 42.7
HPP92_017275 Vanilla planifolia HOM05D002899 ORTHO05D003850 2.3e-22 109.8 126 46.0
Medtr7g070290 Medicago truncatula HOM05D002899 ORTHO05D003850 1.9e-21 106.7 162 42.0
C05p15450 Brassica napus HOM05D002899 ORTHO05D003850 4.3e-21 105.5 124 44.4
Cc07_g20660 Coffea canephora HOM05D002899 ORTHO05D003850 1.8e-19 100.1 183 38.3
Ciclev10018077m.g Citrus clementina HOM05D002899 ORTHO05D003850 3.1e-19 99.4 154 35.1
Gohir.D10G191600 Gossypium hirsutum HOM05D002899 ORTHO05D003850 2.0e-18 96.7 179 36.3
Actinidia27037 Actinidia chinensis HOM05D002899 ORTHO05D003850 2.6e-18 96.3 73 67.1
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 5.8e-18 95.1 66 75.8
Gorai.011G214400 Gossypium raimondii HOM05D002899 ORTHO05D003850 1.3e-17 94.0 179 36.3
MCO06G176 Micromonas commoda HOM05D002899 ORTHO05D003850 1.3e-17 94.0 183 31.7
Cre07.g325713 Chlamydomonas reinhardtii HOM05D002899 ORTHO05D003850 1.1e-16 90.9 195 28.2
Ciclev10015230m.g Citrus clementina HOM05D002899 ORTHO05D003850 9.2e-16 87.8 134 38.1
Ciclev10031700m.g Citrus clementina HOM05D002899 ORTHO05D003850 1.7e-14 83.6 144 34.7
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 3.0e-14 82.8 70 62.9
Lj9C25T5 Lonicera japonica HOM05D002899 ORTHO05D003850 8.6e-14 81.3 66 59.1
Glyma.18G031866 Glycine max HOM05D002899 ORTHO05D027421 3.6e-12 75.9 87 42.5
COL.COLO4_00251 Corchorus olitorius HOM05D002899 ORTHO05D003850 6.8e-11 71.6 129 38.0
PGR031G2485 Punica granatum HOM05D002899 ORTHO05D003850 1.5e-10 70.5 81 50.6
Lj9A25T22 Lonicera japonica HOM05D002899 ORTHO05D003850 2.0e-10 70.1 52 69.2
COL.COLO4_24094 Corchorus olitorius HOM05D002899 ORTHO05D003850 7.6e-10 68.2 64 54.7
Eucgr.G00836 Eucalyptus grandis HOM05D002899 ORTHO05D003850 2.2e-09 66.6 57 63.2
Aqoxy6G01664 Aquilegia oxysepala HOM05D002899 ORTHO05D003850 8.4e-09 64.7 43 76.7
BolC5t30253H Brassica oleracea HOM05D002899 ORTHO05D003850 7.1e-08 61.6 65 44.6
TPR.G26966 Trifolium pratense HOM05D002899 ORTHO05D003850 3.5e-07 59.3 51 60.8
Actinidia24632 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.0e-06 57.8 56 60.7
Eucgr.G00703 Eucalyptus grandis HOM05D002899 ORTHO05D003850 8.7e-06 54.7 53 56.6


User provided reference genes

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