Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0008510 Simmondsia chinensis HOM05D000001 ORTHO05D017827 1.0e-38 162.9 83 100.0
Sc09g0008560 Simmondsia chinensis HOM05D000001 ORTHO05D001705 7.7e-34 146.7 82 93.9
Sc11g0002180 Simmondsia chinensis HOM05D000001 ORTHO05D001705 2.2e-33 145.2 82 92.7
Sc06g0010120 Simmondsia chinensis HOM05D000001 ORTHO05D001705 1.9e-32 142.1 82 91.5
Sc09g0008610 Simmondsia chinensis HOM05D000001 ORTHO05D001705 5.1e-30 134.0 82 86.6
Sc09g0008500 Simmondsia chinensis HOM05D000001 ORTHO05D001705 2.6e-29 131.7 82 85.4
QL10p022566 Quercus lobata HOM05D000001 ORTHO05D001705 4.5e-26 120.9 83 75.9
Ciclev10007521m.g Citrus clementina HOM05D000001 ORTHO05D001705 6.5e-25 117.1 84 73.8
Sc09g0008430 Simmondsia chinensis HOM05D000001 ORTHO05D017827 2.5e-24 115.2 66 90.9
MBI09_g34416_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D001705 7.2e-24 113.6 82 72.0
MBI09_g44560_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D001705 7.2e-24 113.6 82 72.0
Prupe.1G571700 Prunus persica HOM05D000001 ORTHO05D001705 7.2e-24 113.6 83 73.5
CANSAT80G0947 Cannabis sativa HOM05D000001 ORTHO05D001705 1.6e-23 112.5 81 71.6
CANSAT80G1553 Cannabis sativa HOM05D000001 ORTHO05D001705 1.6e-23 112.5 81 71.6
Glyma.05G155200 Glycine max HOM05D000001 ORTHO05D001705 1.6e-23 112.5 84 71.4
arahy.Tifrunner.gnm1.ann1.9Q7QAB Arachis hypogaea HOM05D000001 ORTHO05D001705 3.6e-23 111.3 83 71.1
Lalb_Chr07g0186661 Lupinus albus HOM05D000001 ORTHO05D001705 3.6e-23 111.3 83 71.1
COL.COLO4_18026 Corchorus olitorius HOM05D000001 ORTHO05D001705 1.4e-22 109.4 83 71.1
Sc09g0008480 Simmondsia chinensis HOM05D000001 ORTHO05D017827 1.4e-22 109.4 65 89.2
arahy.Tifrunner.gnm1.ann1.FRTK5I Arachis hypogaea HOM05D000001 ORTHO05D001705 2.3e-22 108.6 83 69.9
CSS0004155 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D001705 2.3e-22 108.6 83 69.9
CsaV3_1G044660 Cucumis sativus L. HOM05D000001 ORTHO05D001705 2.3e-22 108.6 84 67.9
MD08G1235200 Malus domestica HOM05D000001 ORTHO05D001705 2.3e-22 108.6 83 71.1
VMungo0251G2533 Vigna mungo HOM05D000001 ORTHO05D001705 2.3e-22 108.6 83 69.9
Phvul.002G235300 Phaseolus vulgaris HOM05D000001 ORTHO05D001705 3.0e-22 108.2 83 68.7
TAR628G0441 Trochodendron aralioides HOM05D000001 ORTHO05D001705 3.0e-22 108.2 83 68.7
arahy.Tifrunner.gnm1.ann1.3SGI17 Arachis hypogaea HOM05D000001 ORTHO05D001705 4.0e-22 107.8 83 69.9
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.0e-22 107.8 84 67.9
LjContig00408g0021336 Lotus japonicus HOM05D000001 ORTHO05D001705 4.0e-22 107.8 83 67.5
MD15G1426500 Malus domestica HOM05D000001 ORTHO05D001705 4.0e-22 107.8 83 71.1
Potri.014G116600 Populus trichocarpa HOM05D000001 ORTHO05D001705 4.0e-22 107.8 83 66.3
ClCG03G010910 Citrullus lanatus HOM05D000001 ORTHO05D001705 5.2e-22 107.5 84 65.5
Haze_21569 Corylus avellana HOM05D000001 ORTHO05D001705 5.2e-22 107.5 82 68.3
MBI16_g29181_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D001705 5.2e-22 107.5 82 68.3
Migut.I01121 Erythranthe guttata HOM05D000001 ORTHO05D001705 6.7e-22 107.1 84 64.3
FvH4_2g29640 Fragaria vesca HOM05D000001 ORTHO05D001705 6.7e-22 107.1 84 67.9
FAN15G0478 Fragaria x ananassa HOM05D000001 ORTHO05D001705 6.7e-22 107.1 84 67.9
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 6.7e-22 107.1 84 67.9
FAN24G1128 Fragaria x ananassa HOM05D000001 ORTHO05D001705 6.7e-22 107.1 84 67.9
Manes.01G231600 Manihot esculenta HOM05D000001 ORTHO05D001705 6.7e-22 107.1 84 70.2
Cpa.g.sc25.15 Carica papaya HOM05D000001 ORTHO05D001705 8.8e-22 106.7 84 65.5
MELO3C029427.2 Cucumis melo HOM05D000001 ORTHO05D001705 8.8e-22 106.7 84 65.5
RcHm_v2.0_Chr6g0298611 Rosa chinensis HOM05D000001 ORTHO05D001705 8.8e-22 106.7 84 65.5
Duzib248G1134 Durio zibethinus HOM05D000001 ORTHO05D001705 1.5e-21 105.9 83 69.9
QL06p012966 Quercus lobata HOM05D000001 ORTHO05D001705 1.5e-21 105.9 83 65.1
TAR376G0558 Trochodendron aralioides HOM05D000001 ORTHO05D001705 1.5e-21 105.9 83 65.1
FAN19G0277 Fragaria x ananassa HOM05D001882 ORTHO05D002314 2.6e-21 105.1 84 66.7
Duzib132G0274 Durio zibethinus HOM05D000001 ORTHO05D001705 3.3e-21 104.8 83 68.7
Sed0022773 Sechium edule HOM05D000001 ORTHO05D001705 3.3e-21 104.8 84 65.5
Eucgr.C01788 Eucalyptus grandis HOM05D000001 ORTHO05D001705 4.4e-21 104.4 83 63.9
PGSC0003DMG400018438 Solanum tuberosum HOM05D000001 ORTHO05D001705 4.4e-21 104.4 83 65.1
FvH4_1g18840 Fragaria vesca HOM05D000001 ORTHO05D001705 5.7e-21 104.0 84 66.7
Nn5g27228 Nelumbo nucifera HOM05D000001 ORTHO05D001705 5.7e-21 104.0 84 64.3
SHI34122 Sapria himalayana HOM05D000001 ORTHO05D001705 5.7e-21 104.0 84 63.1
Thecc.02G004700 Theobroma cacao HOM05D000001 ORTHO05D001705 5.7e-21 104.0 84 66.7
FAN26G2690 Fragaria x ananassa HOM05D000001 ORTHO05D001705 7.5e-21 103.6 84 66.7
Sopen05g003600 Solanum pennellii HOM05D000001 ORTHO05D001705 7.5e-21 103.6 83 65.1
Nitab4.5_0000040g0040 Nicotiana tabacum HOM05D000001 ORTHO05D001705 1.3e-20 102.8 83 63.9
Peaxi162Scf00389g00625 Petunia axillaris HOM05D000001 ORTHO05D001705 1.7e-20 102.4 83 63.9
QL02p022583 Quercus lobata HOM05D000001 ORTHO05D001705 1.7e-20 102.4 83 62.7
Gohir.D12G047733 Gossypium hirsutum HOM05D000001 ORTHO05D001705 2.2e-20 102.1 83 68.7
Gorai.008G050500 Gossypium raimondii HOM05D000001 ORTHO05D001705 2.2e-20 102.1 83 68.7
Gohir.D04G159200 Gossypium hirsutum HOM05D000001 ORTHO05D001705 2.8e-20 101.7 83 67.5
Gorai.012G146600 Gossypium raimondii HOM05D000001 ORTHO05D001705 2.8e-20 101.7 83 67.5
Solyc05g007740.3 Solanum lycopersicum HOM05D000001 ORTHO05D001705 2.8e-20 101.7 83 63.9
CAN.G1335.14 Capsicum annuum HOM05D000001 ORTHO05D001705 3.7e-20 101.3 83 63.9
CiPaw.08G013300 Carya illinoinensis HOM05D000001 ORTHO05D001705 3.7e-20 101.3 83 65.1
Sabra14G0086400 Salix brachista HOM05D000001 ORTHO05D001705 3.7e-20 101.3 83 62.7
DCAR_022878 Daucus carota HOM05D000001 ORTHO05D001705 4.8e-20 100.9 80 63.8
Dinv30177 Davidia involucrata HOM05D000001 ORTHO05D001705 4.8e-20 100.9 84 66.7
MBI16_g36192_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D017827 4.8e-20 100.9 79 65.8
Nitab4.5_0004300g0020 Nicotiana tabacum HOM05D000001 ORTHO05D001705 4.8e-20 100.9 83 62.7
Gohir.A04G117500 Gossypium hirsutum HOM05D000001 ORTHO05D001705 8.2e-20 100.1 83 67.5
Hma1.2p1_0000F.1_g000760 Hydrangea macrophylla HOM05D000001 ORTHO05D001705 8.2e-20 100.1 84 65.5
Glyma.08G113100 Glycine max HOM05D000001 ORTHO05D001705 1.4e-19 99.4 84 64.3
Gohir.A12G049200 Gossypium hirsutum HOM05D000001 ORTHO05D001705 1.4e-19 99.4 83 66.3
Rhsim02G0194600 Rhododendron simsii HOM05D000001 ORTHO05D001705 2.4e-19 98.6 83 62.7
Hund02287 Selenicereus undatus HOM05D000001 ORTHO05D001705 7.0e-19 97.1 82 63.4
Psat5g290960 Pisum sativum HOM05D000001 ORTHO05D001705 2.7e-18 95.1 84 59.5
Cc11_g01830 Coffea canephora HOM05D000001 ORTHO05D001705 4.5e-18 94.4 84 61.9
Ca_03556_v3 Cicer arietinum L. HOM05D000001 ORTHO05D001705 1.7e-17 92.4 84 57.1
Atru.chr1.3252 Acer truncatum HOM05D000001 ORTHO05D001705 2.9e-17 91.7 82 57.3
SalBow6G3623 Salvia bowleyana HOM05D000001 ORTHO05D001705 3.8e-17 91.3 84 53.6
SalBow6G6356 Salvia bowleyana HOM05D000001 ORTHO05D001705 3.8e-17 91.3 84 53.6
Lj3g0008165 Lotus japonicus HOM05D000001 ORTHO05D001705 5.0e-17 90.9 82 59.8
Os01g0737900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D001705 8.5e-17 90.1 80 60.0
TWI15G0218 Tripterygium wilfordii HOM05D000001 ORTHO05D001705 1.1e-16 89.7 84 56.0
HanXRQChr10g0279681 Helianthus annuus HOM05D000001 ORTHO05D001705 1.5e-16 89.4 83 55.4
Oeu030249.1 Olea europaea HOM05D000001 ORTHO05D001705 1.5e-16 89.4 82 57.3
AUR62023318 Chenopodium quinoa HOM05D000001 ORTHO05D001705 2.5e-16 88.6 80 60.0
Zm00001eb153890 Zea mays HOM05D000001 ORTHO05D001705 2.5e-16 88.6 80 57.5
AT2G25580 Arabidopsis thaliana HOM05D000001 ORTHO05D001705 4.2e-16 87.8 82 58.5
THA.LOC104803703 Tarenaya hassleriana HOM05D000001 ORTHO05D001705 4.2e-16 87.8 84 56.0
EL10Ac2g04582 Beta vulgaris HOM05D000001 ORTHO05D001705 1.2e-15 86.3 82 59.8
AUR62008985 Chenopodium quinoa HOM05D000001 ORTHO05D001705 1.2e-15 86.3 80 58.8
AUR62044251 Chenopodium quinoa HOM05D000001 ORTHO05D017827 1.2e-15 86.3 80 58.8
AL4G17020 Arabidopsis lyrata HOM05D000001 ORTHO05D001705 2.1e-15 85.5 82 56.1
SGA_v2.0_scaffold71G23908 Striga asiatica HOM05D000001 ORTHO05D001705 3.6e-15 84.7 81 51.9
ECA246G4048 Erigeron canadensis HOM05D000001 ORTHO05D001705 8.0e-15 83.6 83 53.0
HanXRQChr12g0380151 Helianthus annuus HOM05D000001 ORTHO05D001705 1.0e-14 83.2 81 55.6
Carub.0004s0529 Capsella rubella HOM05D000001 ORTHO05D001705 5.2e-14 80.9 84 53.6
Thhalv10024867m.g Eutrema salsugineum HOM05D000001 ORTHO05D001705 6.8e-14 80.5 80 57.5
Sp4g04980 Schrenkiella parvula HOM05D000001 ORTHO05D001705 8.8e-14 80.1 86 51.2
Thhalv10000083m.g Eutrema salsugineum HOM05D000001 ORTHO05D001705 1.2e-13 79.7 86 52.3
Medtr1g040705 Medicago truncatula HOM05D000001 ORTHO05D001705 1.5e-13 79.3 84 52.4
Sp7g30240 Schrenkiella parvula HOM05D000001 ORTHO05D001705 2.0e-13 79.0 80 56.2
AT4G32450 Arabidopsis thaliana HOM05D000001 ORTHO05D001705 4.4e-13 77.8 80 55.0
Lsat_1_v5_gn_9_82641 Lactuca sativa HOM05D000001 ORTHO05D001705 5.7e-13 77.4 80 52.5
Medtr5g042450 Medicago truncatula HOM05D000001 ORTHO05D001705 5.7e-13 77.4 84 51.2
CARHR240380 Cardamine hirsuta HOM05D000001 ORTHO05D001705 7.5e-13 77.0 80 55.0
Aa31LG6G5920 Aethionema arabicum HOM05D000001 ORTHO05D001705 1.7e-12 75.9 85 45.9
A09p55550 Brassica napus HOM05D000001 ORTHO05D001705 1.7e-12 75.9 82 53.7
BraA09t40957Z Brassica rapa HOM05D000001 ORTHO05D001705 1.7e-12 75.9 82 53.7
AL7G19380 Arabidopsis lyrata HOM05D000001 ORTHO05D001705 2.8e-12 75.1 80 53.8
A01p05920 Brassica napus HOM05D001686 ORTHO05D001645 2.8e-12 75.1 80 53.8
BraA01t00559Z Brassica rapa HOM05D001686 ORTHO05D001645 2.8e-12 75.1 80 53.8
BcaB08g35196 Brassica carinata HOM05D000001 ORTHO05D001705 3.7e-12 74.7 85 50.6
BcaC07g40856 Brassica carinata HOM05D000001 ORTHO05D001705 3.7e-12 74.7 82 52.4
CARHR115760 Cardamine hirsuta HOM05D000001 ORTHO05D001705 3.7e-12 74.7 84 48.8
Ah.16g101830 Amaranthus hybridus HOM05D000001 ORTHO05D001705 4.8e-12 74.3 82 53.7
PSO170G2978 Papaver somniferum HOM05D000001 ORTHO05D001705 4.8e-12 74.3 83 54.2
ECA248G0610 Erigeron canadensis HOM05D000001 ORTHO05D001705 8.3e-12 73.6 73 50.7
Lsat_1_v5_gn_9_82841 Lactuca sativa HOM05D000001 ORTHO05D001705 8.3e-12 73.6 80 50.0
PSO675G2106 Papaver somniferum HOM05D000001 ORTHO05D001705 8.3e-12 73.6 81 48.1
Psat1g014120 Pisum sativum HOM05D000001 ORTHO05D001705 8.3e-12 73.6 73 56.2
C08p38540 Brassica napus HOM05D000001 ORTHO05D001705 2.4e-11 72.0 82 50.0
BolC8t51426H Brassica oleracea HOM05D000001 ORTHO05D001705 2.4e-11 72.0 82 50.0
CDE09G0011 Ceratophyllum demersum HOM05D000001 ORTHO05D001705 2.4e-11 72.0 80 50.0
Medtr2g022040 Medicago truncatula HOM05D000001 ORTHO05D001705 3.1e-11 71.6 82 51.2
PSO541G3649 Papaver somniferum HOM05D000001 ORTHO05D001705 4.1e-11 71.2 83 54.2
unitig_26.g8920 Utricularia gibba HOM05D000001 ORTHO05D001705 4.1e-11 71.2 51 66.7
GSVIVG01035810001 Vitis vinifera HOM05D000001 ORTHO05D001705 4.1e-11 71.2 81 48.1
AL1G43540 Arabidopsis lyrata HOM05D000001 ORTHO05D001705 1.2e-10 69.7 80 48.8
BcaC09g52035 Brassica carinata HOM05D000001 ORTHO05D001705 1.2e-10 69.7 51 64.7
Lsat_1_v5_gn_9_81640 Lactuca sativa HOM05D000001 ORTHO05D001705 1.2e-10 69.7 85 47.1
C01p06540 Brassica napus HOM05D001686 ORTHO05D001645 1.6e-10 69.3 80 48.8
Thhalv10017960m.g Eutrema salsugineum HOM05D000001 ORTHO05D001705 5.9e-10 67.4 87 47.1
PSO017G0799 Papaver somniferum HOM05D000001 ORTHO05D001705 5.9e-10 67.4 83 48.2
HPP92_017182 Vanilla planifolia HOM05D000001 ORTHO05D001705 1.3e-09 66.2 81 48.1
AT1G29710 Arabidopsis thaliana HOM05D000001 ORTHO05D001705 2.2e-09 65.5 80 47.5
Aqoxy4G00826 Aquilegia oxysepala HOM05D000001 ORTHO05D001705 3.8e-09 64.7 85 49.4
AL4G30340 Arabidopsis lyrata HOM05D000001 ORTHO05D001705 3.8e-09 64.7 84 46.4
Carub.0004s1604 Capsella rubella HOM05D000001 ORTHO05D001705 3.8e-09 64.7 84 45.2
PSO675G5693 Papaver somniferum HOM05D000001 ORTHO05D001705 8.5e-09 63.5 83 50.6
Thhalv10002347m.g Eutrema salsugineum HOM05D000001 ORTHO05D001705 7.2e-08 60.5 79 46.8
AT2G34370 Arabidopsis thaliana HOM05D000001 ORTHO05D001705 1.2e-07 59.7 76 47.4
BolC1t00648H Brassica oleracea HOM05D000001 ORTHO05D001705 1.2e-07 59.7 40 65.0
Psat1g089320 Pisum sativum HOM05D000001 ORTHO05D017827 1.2e-07 59.7 58 58.6
TPR.G15020 Trifolium pratense HOM05D000001 ORTHO05D001705 8.0e-07 57.0 37 73.0
BolC6t39120H Brassica oleracea HOM05D000001 ORTHO05D001705 1.8e-06 55.8 82 40.2
BcaB03g15909 Brassica carinata HOM05D000001 ORTHO05D001705 2.3e-06 55.5 82 43.9
THA.LOC104804527 Tarenaya hassleriana HOM05D000001 ORTHO05D017827 3.0e-06 55.1 36 72.2


User provided reference genes

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