Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0006000 Simmondsia chinensis HOM05D015224 ORTHO05D388293 5.0e-238 827.4 428 100.0
Sc25g0003800 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.8e-13 79.3 105 39.0
Sc09g0007220 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.0e-12 79.0 87 46.0
Sc15g0003120 Simmondsia chinensis HOM05D003387 ORTHO05D011165 6.6e-12 76.3 133 35.3
Sc03g0005120 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.2e-10 72.0 80 45.0
Sc26g0003450 Simmondsia chinensis HOM05D031019 ORTHO05D011165 2.3e-09 67.8 99 36.4
Sc13g0008890 Simmondsia chinensis HOM05D031019 ORTHO05D011165 4.0e-09 67.0 99 40.4
Sc20g0003080 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.0e-09 67.0 78 46.2
Sc21g0003950 Simmondsia chinensis HOM05D015224 ORTHO05D011165 4.0e-09 67.0 92 39.1
Sc14g0005430 Simmondsia chinensis HOM05D012448 ORTHO05D011165 5.2e-09 66.6 114 34.2
Sc04g0003810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.9e-09 65.9 92 37.0
Sc07g0004700 Simmondsia chinensis HOM05D012448 ORTHO05D011165 8.9e-09 65.9 118 32.2
Sc04g0006840 Simmondsia chinensis HOM05D003387 ORTHO05D011165 1.2e-08 65.5 80 41.2
Sc03g0007670 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.0e-08 64.7 93 36.6
Sc21g0004200 Simmondsia chinensis HOM05D012448 ORTHO05D011165 2.0e-08 64.7 93 40.9
Sc25g0001610 Simmondsia chinensis HOM05D015224 ORTHO05D011165 2.0e-08 64.7 94 40.4
SMO146G0032 Selaginella moellendorffii HOM05D003387 ORTHO05D005400 2.6e-08 64.3 100 37.0
Sc16g0004600 Simmondsia chinensis HOM05D008654 ORTHO05D011165 4.4e-08 63.5 99 40.4
Sc16g0004730 Simmondsia chinensis HOM05D003387 ORTHO05D011165 4.4e-08 63.5 90 41.1
SEGI_27673 Sequoiadendron giganteum HOM05D003387 ORTHO05D005400 5.8e-08 63.2 90 37.8
SMO146G0120 Selaginella moellendorffii HOM05D003387 ORTHO05D002201 7.5e-08 62.8 73 47.9
Sc07g0005580 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.5e-08 62.8 127 29.9
Sc07g0005590 Simmondsia chinensis HOM05D003387 ORTHO05D011165 7.5e-08 62.8 127 29.9
Sc11g0004550 Simmondsia chinensis HOM05D012448 ORTHO05D011165 7.5e-08 62.8 79 38.0
HPP92_002768 Vanilla planifolia HOM05D003387 ORTHO05D005400 1.7e-07 61.6 133 31.6
Sc12g0007970 Simmondsia chinensis HOM05D003387 ORTHO05D011165 2.2e-07 61.2 101 33.7
HanXRQChr05g0144181 Helianthus annuus HOM05D003387 ORTHO05D005400 2.9e-07 60.8 133 30.1
QL06p031237 Quercus lobata HOM05D003387 ORTHO05D005400 2.9e-07 60.8 133 27.8
Lj8C37T13 Lonicera japonica HOM05D003387 ORTHO05D235663 3.7e-07 60.5 116 32.8
PSO675G7282 Papaver somniferum HOM05D003387 ORTHO05D005400 3.7e-07 60.5 134 32.1
Sc08g0005810 Simmondsia chinensis HOM05D012448 ORTHO05D011165 3.7e-07 60.5 85 35.3
AagrBONN_evm.TU.Sc2ySwM_368.3328 Anthoceros agrestis HOM05D003387 ORTHO05D005400 4.9e-07 60.1 90 37.8
ECA232G0053 Erigeron canadensis HOM05D003387 ORTHO05D005400 4.9e-07 60.1 133 28.6
Mapoly0001s0481 Marchantia polymorpha HOM05D003387 ORTHO05D005400 4.9e-07 60.1 133 30.8
BcaB04g17624 Brassica carinata HOM05D003387 ORTHO05D005400 6.4e-07 59.7 133 30.1
Cfa002795 Carpinus fangiana HOM05D003387 ORTHO05D005400 8.3e-07 59.3 90 37.8
PSO541G1407 Papaver somniferum HOM05D003387 ORTHO05D005400 8.3e-07 59.3 134 31.3
GSVIVG01022282001 Vitis vinifera HOM05D003387 ORTHO05D005400 8.3e-07 59.3 133 28.6
Ah.05g168100 Amaranthus hybridus HOM05D003387 ORTHO05D005400 1.1e-06 58.9 90 38.9
arahy.Tifrunner.gnm1.ann1.9CFF48 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.1e-06 58.9 86 39.5
arahy.Tifrunner.gnm1.ann1.K61U57 Arachis hypogaea HOM05D003387 ORTHO05D005400 1.1e-06 58.9 86 39.5
Sc11g0003900 Simmondsia chinensis HOM05D015224 ORTHO05D011165 1.1e-06 58.9 65 47.7
Carub.0001s3449 Capsella rubella HOM05D003387 ORTHO05D005400 1.4e-06 58.5 116 31.0
CiPaw.15G014400 Carya illinoinensis HOM05D003387 ORTHO05D005400 1.4e-06 58.5 133 29.3
Hund26682 Selenicereus undatus HOM05D003387 ORTHO05D005400 1.4e-06 58.5 116 32.8
Eucgr.F04205 Eucalyptus grandis HOM05D003387 ORTHO05D005400 1.9e-06 58.2 133 28.6
Pp3c14_14100 Physcomitrium patens HOM05D003387 ORTHO05D005400 1.9e-06 58.2 90 35.6
Sc23g0004730 Simmondsia chinensis HOM05D015224 ORTHO05D388619 1.9e-06 58.2 83 39.8
AL1G51590 Arabidopsis lyrata HOM05D003387 ORTHO05D005400 2.4e-06 57.8 116 31.0
AT1G43190 Arabidopsis thaliana HOM05D003387 ORTHO05D005400 2.4e-06 57.8 116 31.0
CiPaw.16G009800 Carya illinoinensis HOM05D003387 ORTHO05D005400 2.4e-06 57.8 133 28.6
CDE06G0083 Ceratophyllum demersum HOM05D003387 ORTHO05D005400 2.4e-06 57.8 116 31.9
Lalb_Chr19g0130201 Lupinus albus HOM05D003387 ORTHO05D005400 2.4e-06 57.8 117 34.2
Aa31LG6G9950 Aethionema arabicum HOM05D003387 ORTHO05D005400 3.2e-06 57.4 116 30.2
CARHR035330 Cardamine hirsuta HOM05D003387 ORTHO05D005400 3.2e-06 57.4 116 31.0
CBR_g7995 Chara braunii HOM05D003387 ORTHO05D005400 3.2e-06 57.4 90 36.7
Thhalv10004261m.g Eutrema salsugineum HOM05D003387 ORTHO05D005400 3.2e-06 57.4 116 30.2
Glyma.02G080500 Glycine max HOM05D003387 ORTHO05D005400 3.2e-06 57.4 73 45.2
Glyma.16G165000 Glycine max HOM05D003387 ORTHO05D005400 3.2e-06 57.4 73 45.2
Nn1g06041 Nelumbo nucifera HOM05D003387 ORTHO05D005400 3.2e-06 57.4 134 30.6
PSO700G0143 Papaver somniferum HOM05D003387 ORTHO05D005400 3.2e-06 57.4 133 27.8
Phvul.004G092400 Phaseolus vulgaris HOM05D003387 ORTHO05D005400 3.2e-06 57.4 73 45.2
QL02p037738 Quercus lobata HOM05D003387 ORTHO05D005400 3.2e-06 57.4 133 28.6
QL02p038708 Quercus lobata HOM05D003387 ORTHO05D005400 3.2e-06 57.4 133 28.6
Sp1g32390 Schrenkiella parvula HOM05D003387 ORTHO05D005400 3.2e-06 57.4 116 31.0
BcaC07g37311 Brassica carinata HOM05D003387 ORTHO05D005400 4.1e-06 57.0 116 31.9
A08p06460 Brassica napus HOM05D003387 ORTHO05D005400 4.1e-06 57.0 116 31.9
C08p07450 Brassica napus HOM05D003387 ORTHO05D005400 4.1e-06 57.0 116 31.9
BolC8t47590H Brassica oleracea HOM05D003387 ORTHO05D005400 4.1e-06 57.0 116 31.9
BraA08t32655Z Brassica rapa HOM05D003387 ORTHO05D005400 4.1e-06 57.0 116 31.9
Lj7C377G3 Lonicera japonica HOM05D003387 ORTHO05D005400 4.1e-06 57.0 133 29.3
Lalb_Chr21g0305541 Lupinus albus HOM05D003387 ORTHO05D005400 4.1e-06 57.0 90 35.6
Pp3c14_17110 Physcomitrium patens HOM05D003387 ORTHO05D005400 4.1e-06 57.0 90 35.6
Sc22g0003270 Simmondsia chinensis HOM05D012448 ORTHO05D011165 4.1e-06 57.0 117 27.4
Sc23g0004550 Simmondsia chinensis HOM05D015224 ORTHO05D388671 4.1e-06 57.0 83 39.8
Aqoxy2G00397 Aquilegia oxysepala HOM05D003387 ORTHO05D005400 5.4e-06 56.6 94 37.2
Haze_25093 Corylus avellana HOM05D003387 ORTHO05D005400 5.4e-06 56.6 90 36.7
Lalb_Chr06g0161681 Lupinus albus HOM05D003387 ORTHO05D005400 5.4e-06 56.6 90 35.6
Psat1g100400 Pisum sativum HOM05D003387 ORTHO05D005400 5.4e-06 56.6 117 33.3
Sed0017554 Sechium edule HOM05D003387 ORTHO05D005400 5.4e-06 56.6 151 29.1
Hund19618 Selenicereus undatus HOM05D003387 ORTHO05D005400 5.4e-06 56.6 73 42.5
CiPaw.04G088200 Carya illinoinensis HOM05D003387 ORTHO05D005400 7.0e-06 56.2 90 35.6
ClCG08G002590 Citrullus lanatus HOM05D003387 ORTHO05D005400 7.0e-06 56.2 151 29.1
Ciclev10001148m.g Citrus clementina HOM05D003387 ORTHO05D005400 7.0e-06 56.2 133 28.6
MELO3C024993.2 Cucumis melo HOM05D003387 ORTHO05D005400 7.0e-06 56.2 151 29.1
CsaV3_6G002770 Cucumis sativus L. HOM05D003387 ORTHO05D005400 7.0e-06 56.2 151 29.1
FAN15G3239 Fragaria x ananassa HOM05D003387 ORTHO05D005400 7.0e-06 56.2 133 30.1
Nn5g28791 Nelumbo nucifera HOM05D003387 ORTHO05D005400 7.0e-06 56.2 133 27.1
THA.LOC104809206 Tarenaya hassleriana HOM05D003387 ORTHO05D005400 7.0e-06 56.2 152 27.6
VMungo0464G0875 Vigna mungo HOM05D003387 ORTHO05D005400 7.0e-06 56.2 73 43.8
arahy.Tifrunner.gnm1.ann1.LGJ4PH Arachis hypogaea HOM05D003387 ORTHO05D005400 9.2e-06 55.8 116 31.0
arahy.Tifrunner.gnm1.ann1.RF14FM Arachis hypogaea HOM05D003387 ORTHO05D005400 9.2e-06 55.8 116 31.0
CSS0049572 Camellia sinensis var. sinensis HOM05D003387 ORTHO05D005400 9.2e-06 55.8 133 28.6
Potri.005G194700 Populus trichocarpa HOM05D003387 ORTHO05D005400 9.2e-06 55.8 73 41.1
GSVIVG01034558001 Vitis vinifera HOM05D003387 ORTHO05D005400 9.2e-06 55.8 133 28.6


User provided reference genes

Program Settings