Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 1.8e-170 602.4 298 100.0
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.0e-144 516.9 298 84.2
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 5.0e-144 514.6 296 85.5
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 3.3e-143 511.9 296 84.8
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 3.1e-141 505.4 298 82.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 6.8e-141 504.2 295 83.7
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 1.1e-138 496.9 295 81.4
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 2.4e-138 495.7 292 82.2
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 4.1e-138 495.0 298 80.9
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.2e-137 493.4 298 81.2
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 3.5e-137 491.9 301 80.7
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 2.3e-136 489.2 299 80.3
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.6e-136 487.6 298 78.5
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 6.6e-136 487.6 298 79.5
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 6.6e-136 487.6 298 80.2
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 8.6e-136 487.3 298 79.5
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 8.6e-136 487.3 292 80.8
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 1.5e-135 486.5 309 78.6
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.9e-135 486.1 295 80.3
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 2.5e-135 485.7 298 78.2
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 9.5e-135 483.8 298 78.5
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 1.2e-134 483.4 297 77.8
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 1.2e-134 483.4 298 79.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.6e-134 483.0 299 79.9
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 2.1e-134 482.6 290 79.3
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.6e-134 481.9 298 80.2
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 6.2e-134 481.1 293 78.5
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 8.1e-134 480.7 299 79.6
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 8.1e-134 480.7 298 78.5
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 8.1e-134 480.7 298 78.5
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.1e-133 480.3 295 80.0
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 1.4e-133 479.9 298 78.2
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 1.8e-133 479.6 298 78.5
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 2.3e-133 479.2 300 79.0
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 2.3e-133 479.2 299 79.3
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 6.8e-133 477.6 293 78.8
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 6.8e-133 477.6 298 77.9
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 8.9e-133 477.2 294 78.6
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 1.5e-132 476.5 292 77.7
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 1.5e-132 476.5 295 78.6
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.5e-132 476.5 298 77.9
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 3.4e-132 475.3 298 77.9
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 3.4e-132 475.3 298 77.5
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 4.4e-132 474.9 301 77.7
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 5.8e-132 474.6 298 78.2
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 9.8e-132 473.8 295 78.6
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 1.7e-131 473.0 298 77.9
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 2.2e-131 472.6 298 77.5
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 6.4e-131 471.1 298 76.8
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 8.3e-131 470.7 292 78.4
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 8.3e-131 470.7 328 71.0
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.9e-130 469.5 300 77.7
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.9e-130 469.5 296 78.4
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 3.2e-130 468.8 298 76.5
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 5.4e-130 468.0 292 78.1
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 7.1e-130 467.6 300 77.7
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 7.1e-130 467.6 295 77.6
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.6e-129 466.5 298 77.2
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 2.1e-129 466.1 292 78.1
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 7.8e-129 464.2 298 77.2
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 5.1e-128 461.5 292 77.7
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.9e-127 459.5 333 70.9
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 2.5e-127 459.1 291 75.9
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 3.3e-127 458.8 299 75.3
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 5.6e-127 458.0 292 77.4
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 7.3e-127 457.6 323 71.2
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 7.3e-127 457.6 291 75.6
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 2.8e-126 455.7 291 75.6
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 1.8e-125 453.0 290 76.9
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 4.0e-125 451.8 291 74.9
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 6.8e-125 451.1 291 74.6
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 6.8e-125 451.1 291 74.6
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 6.8e-125 451.1 291 74.6
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 6.8e-125 451.1 291 74.6
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 8.9e-125 450.7 276 79.3
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 3.4e-124 448.7 291 75.3
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 5.8e-124 448.0 298 73.5
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 1.3e-123 446.8 291 73.9
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 1.3e-123 446.8 298 72.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.2e-123 446.0 282 76.6
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 4.6e-121 438.3 291 73.5
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.0e-120 435.6 298 75.2
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.9e-119 433.0 311 70.1
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 9.6e-119 430.6 268 80.6
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 6.2e-118 427.9 270 78.9
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 4.0e-117 425.2 248 82.3
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 9.9e-116 420.6 249 80.3
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 1.3e-115 420.2 286 70.6
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 6.6e-112 407.9 291 69.8
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 6.6e-112 407.9 272 73.2
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 2.5e-111 406.0 237 80.6
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 3.3e-111 405.6 295 68.5
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 2.1e-110 402.9 267 72.3
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.1e-109 399.1 247 79.8
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 3.5e-105 385.6 231 80.1
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 6.6e-104 381.3 222 81.1
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 3.5e-97 359.0 238 73.9
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.1e-90 337.4 407 50.4
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 3.5e-89 332.4 288 58.3
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 4.6e-89 332.0 291 56.7
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 2.3e-88 329.7 290 57.2
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 1.7e-83 313.5 282 63.8
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 6.1e-81 305.1 208 72.6
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 4.4e-63 245.7 272 50.7
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 9.1e-61 238.0 258 56.2
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 4.2e-58 229.2 153 75.8
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 2.0e-55 220.3 292 41.1
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 7.5e-55 218.4 242 47.1
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.2e-52 211.1 120 83.3
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 3.0e-48 196.4 117 74.4
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 2.8e-46 189.9 190 53.7
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 8.0e-41 171.8 218 47.2
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 9.8e-39 164.9 175 53.1
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 1.2e-33 147.9 257 37.4
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 1.4e-32 144.4 111 64.0
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 2.5e-26 123.6 81 77.8
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 7.3e-26 122.1 73 76.7
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 5.6e-18 95.9 52 84.6
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 4.7e-17 92.8 60 75.0
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 8.9e-16 88.6 48 75.0
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 6.4e-14 82.4 47 78.7
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 8.3e-14 82.0 52 69.2
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 2.7e-12 77.0 191 33.0
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 3.5e-12 76.6 136 34.6
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 1.7e-11 74.3 59 66.1
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 1.1e-10 71.6 46 69.6
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 3.3e-10 70.1 59 55.9
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 3.6e-09 66.6 170 29.4
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 6.2e-09 65.9 166 31.9
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 1.4e-08 64.7 161 31.7
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 4.4e-07 59.7 170 30.0
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 5.8e-07 59.3 170 28.2
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 9.9e-07 58.5 87 44.8
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.7e-06 57.8 52 59.6
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 1.7e-06 57.8 42 66.7
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 2.2e-06 57.4 26 88.5
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.9e-06 57.0 81 44.4


User provided reference genes

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