Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002500 Simmondsia chinensis HOM05D007256 ORTHO05D009109 4.4e-67 257.7 118 100.0
Hund07289 Selenicereus undatus HOM05D007256 ORTHO05D009109 1.5e-35 152.9 95 69.5
AUR62006795 Chenopodium quinoa HOM05D007256 ORTHO05D009109 2.7e-32 142.1 120 59.2
TAR362G0938 Trochodendron aralioides HOM05D007256 ORTHO05D009109 4.6e-32 141.4 92 69.6
GSVIVG01031300001 Vitis vinifera HOM05D007256 ORTHO05D009109 6.0e-32 141.0 123 53.7
Nitab4.5_0005710g0050 Nicotiana tabacum HOM05D007256 ORTHO05D009109 1.3e-31 139.8 94 66.0
Nitab4.5_0002783g0030 Nicotiana tabacum HOM05D007256 ORTHO05D009109 1.7e-31 139.4 94 66.0
Nn4g25434 Nelumbo nucifera HOM05D007256 ORTHO05D009109 2.3e-31 139.0 96 65.6
Solyc01g100990.3 Solanum lycopersicum HOM05D007256 ORTHO05D009109 6.6e-31 137.5 94 64.9
Sopen01g044450 Solanum pennellii HOM05D007256 ORTHO05D009109 6.6e-31 137.5 94 64.9
EL10Ac4g09530 Beta vulgaris HOM05D007256 ORTHO05D009109 4.3e-30 134.8 88 67.0
PGSC0003DMG400002748 Solanum tuberosum HOM05D007256 ORTHO05D009109 4.3e-30 134.8 94 63.8
CAN.G1374.8 Capsicum annuum HOM05D007256 ORTHO05D009109 5.6e-30 134.4 94 62.8
PSO761G0366 Papaver somniferum HOM05D007256 ORTHO05D009109 5.6e-30 134.4 92 67.4
Peaxi162Scf00357g00431 Petunia axillaris HOM05D007256 ORTHO05D009109 1.2e-29 133.3 95 63.2
ECA238G0534 Erigeron canadensis HOM05D007256 ORTHO05D009109 2.8e-29 132.1 128 50.0
Prupe.6G307100 Prunus persica HOM05D007256 ORTHO05D009109 2.8e-29 132.1 94 61.7
QL03p009202 Quercus lobata HOM05D007256 ORTHO05D009109 2.8e-29 132.1 105 55.2
Hma1.2p1_0052F.1_g030520 Hydrangea macrophylla HOM05D007256 ORTHO05D009109 8.1e-29 130.6 101 58.4
Lsat_1_v5_gn_2_17440 Lactuca sativa HOM05D007256 ORTHO05D009109 1.1e-28 130.2 117 50.4
QL03p009011 Quercus lobata HOM05D007256 ORTHO05D009109 1.1e-28 130.2 105 55.2
HanXRQChr14g0433581 Helianthus annuus HOM05D007256 ORTHO05D009109 1.4e-28 129.8 92 60.9
PSO210G0513 Papaver somniferum HOM05D007256 ORTHO05D009109 1.4e-28 129.8 108 56.5
Cfa006739 Carpinus fangiana HOM05D007256 ORTHO05D009109 1.8e-28 129.4 102 57.8
ATR0693G354 Amborella trichopoda HOM05D007256 ORTHO05D009109 3.1e-28 128.6 107 56.1
CANSAT54G0501 Cannabis sativa HOM05D007256 ORTHO05D009109 4.0e-28 128.3 89 62.9
Haze_04019 Corylus avellana HOM05D007256 ORTHO05D009109 6.9e-28 127.5 93 60.2
Oeu060662.1 Olea europaea HOM05D007256 ORTHO05D009109 8.9e-28 127.1 92 58.7
Ciclev10012993m.g Citrus clementina HOM05D007256 ORTHO05D009109 1.2e-27 126.7 82 67.1
MSTRG.20366 Avicennia marina HOM05D007256 ORTHO05D009109 1.5e-27 126.3 85 62.4
CiPaw.07G034000 Carya illinoinensis HOM05D007256 ORTHO05D009109 2.0e-27 125.9 93 60.2
Eucgr.B01795 Eucalyptus grandis HOM05D007256 ORTHO05D009109 2.0e-27 125.9 82 63.4
Aqoxy2G02591 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 4.4e-27 124.8 106 55.7
COL.COLO4_05498 Corchorus olitorius HOM05D007256 ORTHO05D009109 4.4e-27 124.8 86 62.8
Manes.08G108700 Manihot esculenta HOM05D007256 ORTHO05D009109 7.6e-27 124.0 83 66.3
Duzib177G1002 Durio zibethinus HOM05D007256 ORTHO05D009109 2.2e-26 122.5 101 57.4
Cc02_g35540 Coffea canephora HOM05D007256 ORTHO05D009109 2.9e-26 122.1 102 59.8
Duzib177G0019 Durio zibethinus HOM05D007256 ORTHO05D009109 4.9e-26 121.3 84 63.1
Zm00001eb333750 Zea mays HOM05D007256 ORTHO05D009109 4.9e-26 121.3 101 56.4
Potri.013G004801 Populus trichocarpa HOM05D007256 ORTHO05D009109 8.4e-26 120.6 82 64.6
SGA_v2.0_scaffold438G51636 Striga asiatica HOM05D007256 ORTHO05D009109 8.4e-26 120.6 95 53.7
Gohir.A13G030200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 1.1e-25 120.2 115 50.4
Atru.chr12.1603 Acer truncatum HOM05D007256 ORTHO05D009109 1.4e-25 119.8 81 67.9
Thecc.05G327400 Theobroma cacao HOM05D007256 ORTHO05D009109 1.4e-25 119.8 101 54.5
Gohir.D13G028200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 1.9e-25 119.4 94 56.4
Gorai.013G032200 Gossypium raimondii HOM05D007256 ORTHO05D009109 1.9e-25 119.4 94 56.4
Migut.B00859 Erythranthe guttata HOM05D007256 ORTHO05D009109 2.4e-25 119.0 108 53.7
MD12G1202300 Malus domestica HOM05D007256 ORTHO05D009109 9.3e-25 117.1 87 62.1
QL03p009259 Quercus lobata HOM05D007256 ORTHO05D009109 9.3e-25 117.1 105 52.4
Sabra13G0003900 Salix brachista HOM05D007256 ORTHO05D009109 1.6e-24 116.3 82 63.4
MELO3C015247.2 Cucumis melo HOM05D000487 ORTHO05D000405 2.7e-24 115.5 87 57.5
DCAR_002110 Daucus carota HOM05D007256 ORTHO05D009109 2.7e-24 115.5 86 61.6
RcHm_v2.0_Chr3g0458031 Rosa chinensis HOM05D007256 ORTHO05D009109 2.7e-24 115.5 92 55.4
Aa31LG11G9900 Aethionema arabicum HOM05D007256 ORTHO05D009109 6.0e-24 114.4 88 59.1
CDE08G0276 Ceratophyllum demersum HOM05D007256 ORTHO05D009109 7.8e-24 114.0 113 51.3
FvH4_6g08160 Fragaria vesca HOM05D007256 ORTHO05D009109 7.8e-24 114.0 103 49.5
AL6G38610 Arabidopsis lyrata HOM05D007256 ORTHO05D009109 1.0e-23 113.6 83 61.4
FAN09G0386 Fragaria x ananassa HOM05D007256 ORTHO05D009109 3.0e-23 112.1 105 49.5
Os01g0252200 Oryza sativa ssp. japonica HOM05D007256 ORTHO05D009109 3.9e-23 111.7 92 53.3
THA.LOC104821748 Tarenaya hassleriana HOM05D007256 ORTHO05D009109 3.9e-23 111.7 82 62.2
SalBow7G1589 Salvia bowleyana HOM05D007256 ORTHO05D009109 5.1e-23 111.3 106 49.1
Thhalv10005088m.g Eutrema salsugineum HOM05D007256 ORTHO05D009109 6.6e-23 110.9 82 58.5
CsaV3_1G037970 Cucumis sativus L. HOM05D007256 ORTHO05D009109 8.7e-23 110.5 81 59.3
A09p05700 Brassica napus HOM05D007256 ORTHO05D009109 1.1e-22 110.2 81 55.6
FAN14G3866 Fragaria x ananassa HOM05D007256 ORTHO05D009109 1.1e-22 110.2 87 54.0
BcaB04g19715 Brassica carinata HOM05D007256 ORTHO05D009109 1.5e-22 109.8 81 56.8
Sp2g21240 Schrenkiella parvula HOM05D007256 ORTHO05D009109 1.9e-22 109.4 84 57.1
SEGI_23053 Sequoiadendron giganteum HOM05D007256 ORTHO05D009109 1.9e-22 109.4 113 46.0
Carub.0006s2440 Capsella rubella HOM05D007256 ORTHO05D009109 3.3e-22 108.6 91 52.7
FAN02G0906 Fragaria x ananassa HOM05D007256 ORTHO05D009109 3.3e-22 108.6 113 46.0
Phvul.007G203900 Phaseolus vulgaris HOM05D007256 ORTHO05D009109 3.3e-22 108.6 91 51.6
ClCG03G017800 Citrullus lanatus HOM05D007256 ORTHO05D009109 4.3e-22 108.2 81 56.8
TWI12G0874 Tripterygium wilfordii HOM05D007256 ORTHO05D009109 7.3e-22 107.5 87 55.2
Ah.10g027130 Amaranthus hybridus HOM05D007256 ORTHO05D009109 2.1e-21 105.9 69 66.7
Lalb_Chr02g0147641 Lupinus albus HOM05D007256 ORTHO05D009109 3.6e-21 105.1 79 57.0
VMungo0720G0365 Vigna mungo HOM05D007256 ORTHO05D009109 3.6e-21 105.1 96 49.0
BcaC04g23634 Brassica carinata HOM05D007256 ORTHO05D009109 4.8e-21 104.8 81 54.3
C09p06290 Brassica napus HOM05D007256 ORTHO05D009109 4.8e-21 104.8 81 54.3
Gorai.001G184000 Gossypium raimondii HOM05D007256 ORTHO05D009109 1.1e-20 103.6 81 58.0
Glyma.10G144700 Glycine max HOM05D007256 ORTHO05D009109 1.8e-20 102.8 83 51.8
arahy.Tifrunner.gnm1.ann1.H7RZSB Arachis hypogaea HOM05D007256 ORTHO05D009109 2.4e-20 102.4 113 44.2
Sed0013353 Sechium edule HOM05D007256 ORTHO05D009109 2.4e-20 102.4 78 56.4
BraA09t36210Z Brassica rapa HOM05D007256 ORTHO05D009109 6.9e-20 100.9 100 47.0
arahy.Tifrunner.gnm1.ann1.Q851GZ Arachis hypogaea HOM05D007256 ORTHO05D009109 1.2e-19 100.1 113 43.4
HPP92_001218 Vanilla planifolia HOM05D007256 ORTHO05D009109 1.2e-19 100.1 76 60.5
unitig_699.g19800 Utricularia gibba HOM05D007256 ORTHO05D009109 1.5e-19 99.8 106 47.2
TPR.G2616 Trifolium pratense HOM05D007256 ORTHO05D009109 2.6e-19 99.0 79 53.2
AT5G26749 Arabidopsis thaliana HOM05D007256 ORTHO05D009109 4.5e-19 98.2 101 47.5
Ca_10190_v3 Cicer arietinum L. HOM05D007256 ORTHO05D009109 2.9e-18 95.5 84 47.6
Pp3c18_1910 Physcomitrium patens HOM05D007256 ORTHO05D009109 3.8e-18 95.1 92 48.9
Psat1g134200 Pisum sativum HOM05D007256 ORTHO05D009109 6.4e-18 94.4 83 49.4
Lj5g0000046 Lotus japonicus HOM05D007256 ORTHO05D009109 8.4e-18 94.0 84 46.4
BolC9t53549H Brassica oleracea HOM05D007256 ORTHO05D009109 1.4e-17 93.2 100 44.0
Medtr1g084750 Medicago truncatula HOM05D007256 ORTHO05D009109 1.9e-17 92.8 82 50.0
Mapoly0054s0011 Marchantia polymorpha HOM05D007256 ORTHO05D009109 4.2e-17 91.7 110 42.7
Rhsim05G0121300 Rhododendron simsii HOM05D007256 ORTHO05D009109 5.4e-17 91.3 71 60.6
TPR.G2644 Trifolium pratense HOM05D007256 ORTHO05D009109 8.7e-15 84.0 87 47.1
Cpa.g.sc48.207 Carica papaya HOM05D007256 ORTHO05D009109 1.9e-14 82.8 67 53.7
HPP92_001189 Vanilla planifolia HOM05D007256 ORTHO05D009109 5.6e-14 81.3 42 78.6
SHI06526 Sapria himalayana HOM05D007256 ORTHO05D009109 9.0e-12 73.9 41 75.6
CARHR186830 Cardamine hirsuta HOM05D007256 ORTHO05D009109 4.9e-10 68.2 41 68.3
Gohir.D01G148000 Gossypium hirsutum HOM05D002544 ORTHO05D009109 1.9e-09 66.2 71 47.9
Aqoxy4G00797 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 4.2e-09 65.1 45 64.4
Gohir.D01G139700 Gossypium hirsutum HOM05D007256 ORTHO05D009109 7.1e-09 64.3 67 44.8
vmacro19770 Vaccinium macrocarpon HOM05D007256 ORTHO05D009109 7.1e-09 64.3 41 61.0
PGR042G2181 Punica granatum HOM05D007256 ORTHO05D009109 1.3e-07 60.1 29 75.9
FAN05G3272 Fragaria x ananassa HOM05D000487 ORTHO05D000405 3.0e-07 58.9 61 45.9
Glyma.20G093702 Glycine max HOM05D007256 ORTHO05D009109 2.5e-06 55.8 88 31.8


User provided reference genes

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