Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.4e-156 555.4 281 100.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 8.9e-143 510.4 281 90.4
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 3.3e-137 491.9 285 86.3
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 9.6e-137 490.3 274 88.3
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.6e-136 489.6 286 86.0
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 2.1e-136 489.2 286 86.0
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 6.2e-136 487.6 288 85.1
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 5.3e-135 484.6 276 86.6
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.9e-135 484.2 288 84.7
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 9.0e-135 483.8 282 86.2
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 9.0e-135 483.8 281 85.4
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.2e-134 483.4 284 85.9
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.2e-134 483.4 284 85.9
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 3.4e-134 481.9 292 83.9
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.4e-134 481.9 281 84.7
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 5.8e-134 481.1 290 83.8
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 7.6e-134 480.7 297 81.8
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 9.9e-134 480.3 288 84.0
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 9.9e-134 480.3 292 84.2
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 9.9e-134 480.3 299 81.6
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.2e-133 479.2 275 85.8
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.9e-133 478.8 276 85.9
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 3.8e-133 478.4 274 86.1
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 4.9e-133 478.0 302 81.5
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 6.4e-133 477.6 281 84.0
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.1e-132 476.9 290 83.4
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.1e-132 476.9 282 83.7
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.4e-132 476.5 303 80.5
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.4e-132 476.5 274 85.8
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.4e-132 476.5 299 81.3
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 5.4e-132 474.6 289 84.4
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.2e-131 473.4 281 84.0
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.6e-131 473.0 308 79.5
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.7e-131 472.2 277 85.2
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.7e-131 472.2 304 78.6
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.5e-131 471.9 277 84.8
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.0e-130 470.3 274 85.4
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.0e-130 470.3 299 80.9
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.0e-130 470.3 297 80.8
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.8e-130 469.5 288 81.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 3.0e-130 468.8 274 85.0
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 3.0e-130 468.8 293 79.9
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 3.9e-130 468.4 287 80.8
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.5e-129 466.5 294 81.0
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.5e-129 466.5 275 85.1
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.5e-129 465.7 318 76.7
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 2.5e-129 465.7 294 80.3
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 5.6e-129 464.5 274 83.9
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 5.6e-129 464.5 274 83.9
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 5.6e-129 464.5 291 81.8
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.6e-129 463.8 323 75.5
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 9.6e-129 463.8 268 85.4
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.3e-128 463.4 275 82.5
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.3e-128 463.4 288 81.6
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.8e-128 462.2 275 82.2
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.8e-128 461.5 299 78.6
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.8e-128 461.5 284 81.0
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 6.2e-128 461.1 298 79.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.1e-127 460.3 288 80.6
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.1e-127 460.3 289 80.3
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-127 459.9 284 81.7
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.4e-127 459.1 294 79.6
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 4.0e-127 458.4 294 78.6
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 4.0e-127 458.4 287 82.9
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 6.9e-127 457.6 279 81.4
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 9.0e-127 457.2 283 80.6
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.2e-126 456.8 309 75.7
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.2e-126 456.8 279 81.0
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 1.5e-126 456.4 285 80.4
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.5e-126 456.4 291 79.4
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 9.9e-126 453.8 327 72.8
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.9e-125 452.2 297 79.5
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 6.4e-125 451.1 293 78.2
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 8.4e-125 450.7 303 75.9
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.1e-124 450.3 290 79.0
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 9.3e-124 447.2 292 77.7
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 9.3e-124 447.2 292 77.7
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.2e-123 446.8 321 72.6
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.1e-123 446.0 278 82.0
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 2.1e-123 446.0 278 82.0
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 4.6e-123 444.9 284 81.0
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 7.9e-123 444.1 274 80.3
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.0e-122 443.7 293 77.5
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 2.3e-122 442.6 300 76.3
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.3e-122 442.6 283 77.7
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 8.7e-122 440.7 281 81.1
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.9e-121 439.5 276 79.3
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 2.5e-121 439.1 291 77.7
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 4.3e-121 438.3 281 77.2
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 9.6e-121 437.2 311 72.0
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.3e-120 436.8 274 79.9
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 6.2e-120 434.5 282 78.7
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 8.2e-120 434.1 295 75.6
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 8.2e-120 434.1 295 75.6
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 2.4e-119 432.6 305 75.1
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 3.1e-119 432.2 324 72.2
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 5.3e-119 431.4 274 77.0
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 9.0e-119 430.6 309 72.8
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.9e-117 425.6 281 75.1
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.8e-117 425.2 270 75.2
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.1e-116 423.7 259 82.2
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 5.5e-116 421.4 335 68.4
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.6e-115 419.9 283 73.1
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.3e-114 416.8 279 74.2
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.5e-113 412.5 277 74.0
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 7.4e-113 411.0 297 73.1
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 9.7e-105 384.0 234 82.1
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 2.2e-104 382.9 223 84.8
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.8e-104 381.7 265 71.3
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 3.2e-100 369.0 257 72.0
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.8e-98 363.2 276 70.7
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.8e-98 363.2 292 67.8
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 2.3e-98 362.8 278 68.7
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 3.0e-98 362.5 294 67.3
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 5.9e-94 348.2 256 69.5
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.0e-93 347.4 245 71.0
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 5.2e-90 335.1 206 82.0
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 6.3e-88 328.2 225 76.0
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 4.1e-87 325.5 284 60.2
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.5e-86 322.4 247 67.6
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.7e-85 320.1 177 88.1
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.9e-85 319.3 287 58.9
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.8e-85 318.9 286 58.7
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 5.2e-82 308.5 259 61.8
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 2.0e-81 306.6 301 55.1
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 5.3e-79 298.5 182 82.4
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.2e-77 293.1 215 67.4
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.9e-76 290.0 191 77.0
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 5.5e-76 288.5 272 55.5
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 8.3e-72 274.6 182 76.4
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 1.3e-64 250.8 246 58.9
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 2.7e-62 243.0 191 64.9
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 5.9e-62 241.9 148 83.8
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.4e-50 204.1 111 87.4
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.1e-47 194.5 108 88.0
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.2e-47 193.0 110 84.5
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 7.3e-44 181.8 117 81.2
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 1.1e-42 177.9 106 82.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 4.0e-42 176.0 110 79.1
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 6.8e-42 175.3 269 42.0
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.2e-38 164.5 150 62.0
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.3e-36 155.2 95 81.1
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 2.1e-35 153.7 102 76.5
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 4.7e-35 152.5 94 80.9
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 1.7e-32 144.1 268 34.0
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 2.7e-30 136.7 104 66.3
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 2.5e-28 130.2 119 63.0
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 2.5e-28 130.2 119 63.0
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 5.6e-28 129.0 66 92.4
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 9.6e-28 128.3 119 62.2
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 3.6e-27 126.3 187 43.3
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 3.6e-27 126.3 221 38.0
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 6.2e-27 125.6 106 66.0
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.1e-26 124.8 248 32.3
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.1e-26 124.8 259 32.4
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.8e-26 124.0 119 60.5
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 5.2e-26 122.5 119 60.5
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.2e-25 121.3 119 60.5
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 5.8e-25 119.0 119 59.7
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 5.1e-21 105.9 156 41.0
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 6.6e-21 105.5 88 64.8
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 3.3e-20 103.2 156 41.7
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.6e-19 100.9 84 65.5
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.1e-19 100.5 52 92.3
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 7.9e-14 82.0 46 82.6
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.3e-13 80.5 102 45.1
TWI34G1190 Tripterygium wilfordii HOM05D004147 ORTHO05D414039 4.3e-12 76.3 246 29.7


User provided reference genes

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