Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.5e-200 702.6 342 100.0
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 3.7e-175 618.2 342 87.1
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.7e-175 618.2 342 87.1
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 4.8e-175 617.8 343 87.2
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 1.8e-174 615.9 342 86.5
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.8e-174 615.9 342 86.3
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 3.1e-174 615.1 342 86.3
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 9.1e-174 613.6 342 86.3
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.0e-173 612.5 342 86.3
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.5e-173 611.3 342 87.1
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.0e-172 610.1 342 85.7
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 2.5e-171 605.5 342 85.1
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 2.5e-171 605.5 342 86.8
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 7.2e-171 604.0 342 85.7
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 9.5e-171 603.6 342 86.0
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.6e-170 602.8 343 84.3
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 3.6e-170 601.7 344 83.4
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 2.6e-168 595.5 344 83.1
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 3.4e-168 595.1 342 84.8
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 4.4e-168 594.7 342 83.6
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.2e-167 592.4 342 84.2
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.2e-167 592.4 342 83.6
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 3.7e-167 591.7 342 82.5
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.9e-167 591.3 342 83.9
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 4.9e-167 591.3 344 81.7
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 4.9e-167 591.3 346 83.8
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.3e-167 590.9 342 84.5
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.4e-166 589.7 344 82.6
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.8e-166 589.3 343 82.2
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.8e-166 589.3 342 82.7
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.8e-166 589.3 342 84.8
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.4e-166 589.0 343 84.0
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 3.1e-166 588.6 342 82.2
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.1e-166 588.2 343 82.8
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 5.4e-166 587.8 344 82.0
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 9.2e-166 587.0 343 83.4
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.2e-165 586.6 344 82.3
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.0e-165 585.9 342 82.2
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 2.0e-165 585.9 344 82.0
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 7.8e-165 583.9 343 82.5
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 2.9e-164 582.0 344 80.5
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 3.8e-164 581.6 344 81.1
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 3.8e-164 581.6 342 83.3
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 6.6e-164 580.9 344 80.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.5e-163 579.7 345 80.6
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 9.5e-163 577.0 346 82.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 9.5e-163 577.0 358 78.8
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.2e-162 576.6 335 82.1
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.2e-162 576.6 342 81.3
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 2.8e-162 575.5 344 81.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.0e-162 573.9 342 80.7
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 8.0e-162 573.9 342 81.0
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.8e-161 572.8 358 77.9
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 3.0e-161 572.0 342 80.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 5.2e-161 571.2 358 77.7
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 4.4e-160 568.2 343 79.9
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 5.7e-160 567.8 358 77.7
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 4.9e-159 564.7 349 78.2
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.1e-158 563.5 334 81.1
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.4e-158 562.4 343 78.1
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 3.2e-158 562.0 342 80.4
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 4.6e-157 558.1 344 76.7
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 5.9e-157 557.8 347 78.7
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 5.9e-157 557.8 345 79.1
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 5.9e-157 557.8 343 77.8
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 1.0e-156 557.0 344 78.8
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.0e-156 557.0 347 79.0
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 1.7e-156 556.2 346 78.6
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.3e-156 555.8 349 78.2
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 2.3e-156 555.8 349 78.2
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 5.0e-156 554.7 403 69.0
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 6.6e-156 554.3 345 78.3
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 6.6e-156 554.3 343 77.6
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 1.1e-155 553.5 352 78.1
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.9e-155 552.7 352 77.3
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 1.9e-155 552.7 352 77.3
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.9e-155 552.7 343 76.7
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.5e-155 552.4 369 74.8
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 4.7e-154 548.1 361 77.6
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 4.7e-154 548.1 350 76.9
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 4.0e-153 545.0 342 78.1
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 6.8e-153 544.3 347 77.8
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 1.2e-152 543.5 350 76.6
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.0e-152 542.7 342 75.7
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 3.4e-152 542.0 307 87.3
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 4.4e-152 541.6 344 75.9
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 9.8e-152 540.4 343 75.2
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 2.4e-150 535.8 343 74.9
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.6e-149 533.1 358 74.9
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.0e-149 532.7 343 74.6
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 6.0e-149 531.2 350 74.9
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 1.3e-148 530.0 343 74.3
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 6.6e-148 527.7 340 76.2
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 2.5e-147 525.8 343 73.2
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.5e-147 525.8 344 73.8
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 2.5e-147 525.8 343 75.5
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 2.5e-147 525.8 390 66.7
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 9.5e-147 523.9 344 73.8
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 8.1e-146 520.8 343 74.9
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 3.1e-145 518.8 343 74.9
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 5.2e-145 518.1 322 77.3
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 6.8e-145 517.7 343 75.2
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.7e-143 513.1 345 73.9
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 4.9e-143 511.5 347 72.3
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 8.3e-143 510.8 345 73.6
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.7e-140 503.1 343 72.9
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.3e-140 502.7 353 69.7
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 6.6e-140 501.1 369 67.8
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 6.6e-140 501.1 369 67.8
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.7e-138 495.0 342 69.3
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 7.6e-136 487.6 310 77.1
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 3.2e-134 482.3 365 68.2
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.3e-132 476.1 512 52.5
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 6.6e-132 474.6 366 65.3
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.5e-131 473.4 369 66.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-131 473.4 322 74.2
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 7.3e-131 471.1 305 75.4
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.2e-130 470.3 492 53.7
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 6.2e-130 468.0 342 67.0
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 4.9e-127 458.4 340 64.1
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 6.4e-127 458.0 299 75.3
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 5.1e-124 448.4 248 88.7
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 9.0e-121 437.6 277 77.3
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 4.5e-120 435.3 353 63.7
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 2.2e-119 433.0 334 67.7
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.5e-112 410.2 359 58.2
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.0e-112 409.8 342 57.6
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 6.7e-108 394.8 307 65.1
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.1e-107 394.0 367 55.3
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.1e-102 377.5 373 52.8
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.0e-100 369.4 366 52.2
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 6.3e-98 361.7 341 54.0
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 5.3e-97 358.6 364 53.3
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.4e-89 334.0 304 56.2
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.7e-85 319.7 189 83.1
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 3.6e-85 319.3 169 91.7
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.7e-84 315.1 265 63.0
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.8e-82 309.7 168 89.3
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 3.2e-78 296.2 321 47.7
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 1.8e-76 290.4 197 71.1
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 8.8e-76 288.1 156 88.5
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.6e-69 267.3 182 70.3
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.2e-66 255.0 176 68.2
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 1.7e-63 247.3 316 43.0
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 2.7e-61 240.0 323 40.6
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 4.4e-59 232.6 180 67.8
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 8.3e-58 228.4 129 83.7
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 3.1e-57 226.5 152 71.7
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 7.0e-57 225.3 133 78.2
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 4.0e-52 209.5 170 65.3
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.3e-47 194.5 324 36.1
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.1e-46 191.4 356 37.4
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.5e-46 191.0 101 92.1
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 9.5e-46 188.3 148 60.1
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 9.8e-35 151.8 85 82.4
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 4.6e-24 116.3 65 86.2
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 1.5e-22 111.3 63 82.5
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 3.3e-22 110.2 137 49.6
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 1.4e-20 104.8 65 76.9
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 8.9e-20 102.1 66 72.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.0e-19 100.9 128 50.8
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 2.4e-12 77.4 46 84.8
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.4e-11 73.6 44 75.0
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 4.4e-11 73.2 52 67.3
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.8e-11 72.8 39 89.7
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 1.3e-10 71.6 59 61.0
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 1.9e-09 67.8 35 82.9
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.6e-08 63.2 56 60.7
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.3e-07 61.6 47 66.0
Cfa001622 Carpinus fangiana HOM05D003684 ORTHO05D125656 9.6e-06 55.5 154 26.6


User provided reference genes

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