Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0006790 Simmondsia chinensis HOM05D003128 ORTHO05D004333 1.2e-194 682.9 348 100.0
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 7.0e-121 438.0 399 58.4
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 2.2e-119 433.0 399 58.6
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 2.7e-117 426.0 399 58.4
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 4.4e-115 418.7 399 57.6
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 4.4e-115 418.7 400 56.2
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 2.2e-114 416.4 401 56.6
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 9.2e-113 411.0 401 56.4
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 1.2e-112 410.6 400 56.5
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.0e-112 409.8 403 56.1
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 3.5e-112 409.1 382 56.0
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 7.3e-110 401.4 398 53.3
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 2.3e-108 396.4 383 54.3
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 5.2e-108 395.2 400 54.2
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.5e-107 393.7 375 54.1
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 3.4e-107 392.5 379 54.1
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 7.5e-107 391.3 369 56.1
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 9.8e-107 391.0 374 55.1
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 1.3e-106 390.6 379 53.8
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.1e-105 387.5 357 58.5
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 1.8e-105 386.7 399 53.1
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 1.8e-105 386.7 400 53.8
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 4.1e-105 385.6 398 52.5
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 9.2e-105 384.4 398 52.8
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 2.0e-104 383.3 400 52.2
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 2.7e-104 382.9 407 51.4
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 3.5e-104 382.5 407 52.6
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 3.5e-104 382.5 402 52.7
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 1.0e-103 380.9 398 52.5
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 1.3e-103 380.6 382 52.6
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 3.9e-103 379.0 399 52.1
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 8.6e-103 377.9 401 51.9
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 1.5e-102 377.1 399 52.1
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 2.5e-102 376.3 408 51.7
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 4.3e-102 375.6 386 53.6
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 4.3e-102 375.6 403 52.4
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 1.2e-101 374.0 394 51.5
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 1.6e-101 373.6 399 51.1
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 4.7e-101 372.1 397 52.4
CSS0009858 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.3e-98 364.0 370 54.6
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 1.1e-97 360.9 399 51.6
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 1.1e-97 360.9 388 51.0
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 3.2e-97 359.4 400 50.2
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 3.2e-97 359.4 399 51.4
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 4.1e-97 359.0 396 52.0
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 4.1e-97 359.0 399 50.6
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 7.0e-97 358.2 398 51.5
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 2.0e-96 356.7 399 51.6
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 6.0e-96 355.1 401 50.1
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 6.0e-96 355.1 401 49.1
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 1.7e-95 353.6 400 50.2
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 2.3e-95 353.2 384 49.5
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 5.0e-95 352.1 406 48.5
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 6.6e-95 351.7 385 51.2
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.9e-94 350.1 393 48.9
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 5.6e-94 348.6 400 50.0
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 9.5e-94 347.8 399 49.4
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 2.1e-93 346.7 363 49.6
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 3.6e-93 345.9 396 50.8
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 8.1e-93 344.7 398 48.7
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 2.3e-92 343.2 400 46.5
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 3.1e-92 342.8 401 47.6
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 2.6e-91 339.7 404 48.3
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 9.8e-91 337.8 391 47.3
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.3e-90 337.4 398 49.0
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.1e-89 334.3 401 48.6
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 9.2e-89 331.3 401 48.1
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.2e-88 330.9 402 48.0
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 1.2e-88 330.9 410 47.3
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 1.6e-88 330.5 399 48.6
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 2.7e-88 329.7 401 47.9
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 6.0e-88 328.6 400 47.8
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 7.8e-88 328.2 382 49.5
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 7.8e-88 328.2 399 47.4
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 7.8e-88 328.2 375 46.9
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 7.8e-88 328.2 375 46.9
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 3.9e-87 325.9 399 47.1
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 5.1e-87 325.5 382 49.2
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 6.6e-87 325.1 398 47.5
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 8.6e-87 324.7 394 48.5
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 1.9e-86 323.6 404 46.3
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 1.9e-86 323.6 393 49.6
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.9e-86 323.6 405 46.4
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 4.3e-86 322.4 398 47.2
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 5.6e-86 322.0 394 46.2
AUR62003293 Chenopodium quinoa HOM05D003128 ORTHO05D004333 5.6e-86 322.0 318 52.8
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 7.3e-86 321.6 405 46.2
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 7.3e-86 321.6 405 46.2
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 1.2e-85 320.9 393 47.6
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 4.7e-85 318.9 397 45.6
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 1.1e-84 317.8 399 47.1
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 1.1e-84 317.8 399 47.1
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.1e-84 317.8 478 40.8
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.1e-84 316.2 397 45.6
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 5.2e-84 315.5 404 46.3
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 3.4e-83 312.8 400 46.8
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 4.4e-83 312.4 380 47.4
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 4.4e-83 312.4 402 46.3
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 5.8e-83 312.0 400 46.8
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 1.9e-81 307.0 384 46.9
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 3.2e-81 306.2 390 47.9
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 3.0e-79 299.7 434 42.6
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 3.9e-79 299.3 362 45.3
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 5.1e-79 298.9 374 46.0
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 1.1e-78 297.7 398 45.0
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 7.3e-78 295.0 409 43.8
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 3.6e-77 292.7 366 44.5
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 3.6e-77 292.7 395 41.5
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 2.2e-74 283.5 425 42.1
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 3.8e-74 282.7 400 45.0
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 4.2e-73 279.3 376 44.9
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.1e-70 271.2 389 41.9
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.3e-70 269.6 398 41.7
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 5.6e-70 268.9 302 48.3
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 9.6e-70 268.1 396 40.2
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 2.1e-69 266.9 396 39.6
HPP92_027494 Vanilla planifolia HOM05D003128 ORTHO05D004333 2.8e-69 266.5 396 41.2
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 1.1e-65 254.6 402 37.8
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 5.4e-65 252.3 368 38.3
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 3.9e-63 246.1 378 41.3
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 5.1e-63 245.7 386 40.7
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 6.6e-63 245.4 377 39.3
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.5e-62 244.2 398 41.2
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 9.6e-62 241.5 407 40.0
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 2.0e-59 233.8 397 38.5
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 4.9e-58 229.2 316 41.8
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 1.2e-56 224.6 345 37.7
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 2.5e-54 216.9 424 34.2
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 4.3e-54 216.1 152 64.5
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 9.6e-54 214.9 367 38.4
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 1.6e-53 214.2 373 37.8
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 6.2e-53 212.2 379 37.7
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 4.0e-52 209.5 445 34.2
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.4e-49 201.1 383 34.5
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 3.5e-48 196.4 383 33.9
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 1.3e-47 194.5 154 60.4
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 4.1e-44 183.0 402 33.1
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 5.0e-42 176.0 313 34.2
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.1e-41 174.9 267 40.8
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 5.5e-41 172.6 395 31.1
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 3.6e-40 169.9 216 43.5
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 4.6e-40 169.5 323 33.1
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 2.5e-38 163.7 388 32.7
ECA236G2760 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.1e-36 156.4 169 47.9
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 5.9e-35 152.5 103 71.8
CsaV3_1G042320 Cucumis sativus L. HOM05D003128 ORTHO05D001951 5.0e-34 149.4 316 32.3
ClCG03G013760 Citrullus lanatus HOM05D003128 ORTHO05D004333 3.2e-33 146.7 260 35.4
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 4.2e-33 146.4 419 28.2
arahy.Tifrunner.gnm1.ann1.31C5CF Arachis hypogaea HOM05D003128 ORTHO05D004333 4.8e-29 132.9 143 50.3
C08p48830 Brassica napus HOM05D003128 ORTHO05D024111 1.1e-28 131.7 321 34.3
Psat1g070640 Pisum sativum HOM05D003128 ORTHO05D004333 1.8e-28 131.0 205 41.5
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 1.3e-26 124.8 307 30.3
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 1.3e-26 124.8 402 26.4
Rhsim07G0045000 Rhododendron simsii HOM05D003128 ORTHO05D004333 5.5e-25 119.4 157 44.6
Glyma.14G080000 Glycine max HOM05D003128 ORTHO05D004333 7.9e-24 115.5 137 47.4
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 1.8e-23 114.4 168 38.7
BcaC07g41819 Brassica carinata HOM05D003128 ORTHO05D024111 3.3e-22 110.2 332 32.5
Cpa.g.c41200 Carica papaya HOM05D003128 ORTHO05D004333 1.7e-21 107.8 113 55.8
Psat1g070560 Pisum sativum HOM05D003128 ORTHO05D004333 3.7e-21 106.7 76 72.4
BolC8t52420H Brassica oleracea HOM05D003128 ORTHO05D024111 4.1e-20 103.2 111 52.3
AL5G41890 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 5.0e-18 96.3 100 54.0
SEGI_30432 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 5.5e-17 92.8 153 39.2
CDE08G1262 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 2.4e-12 77.4 79 40.5
ECA238G4552 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.7e-11 73.9 81 45.7
CAN.G710.4 Capsicum annuum HOM05D003128 ORTHO05D004333 4.7e-08 63.2 90 40.0
BolC8t50947H Brassica oleracea HOM05D003128 ORTHO05D004333 1.2e-06 58.5 116 43.1
Oeu011362.1 Olea europaea HOM05D000060 ORTHO05D003150 2.0e-06 57.8 48 52.1
C08p48560 Brassica napus HOM05D003128 ORTHO05D004333 5.7e-06 56.2 37 56.8


User provided reference genes

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