Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 7.8e-42 173.3 84 100.0
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 7.8e-18 93.6 65 70.8
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 7.8e-18 93.6 65 70.8
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.3e-17 92.0 65 69.2
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 5.1e-17 90.9 53 81.1
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.5e-16 88.6 53 77.4
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.5e-16 88.6 53 77.4
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 2.5e-16 88.6 53 81.1
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 4.3e-16 87.8 80 58.8
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.3e-16 87.8 80 58.8
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 4.3e-16 87.8 80 58.8
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 4.3e-16 87.8 80 58.8
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 4.3e-16 87.8 80 58.8
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 5.6e-16 87.4 53 75.5
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 5.6e-16 87.4 53 75.5
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 9.5e-16 86.7 79 57.0
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 1.2e-15 86.3 53 79.2
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 1.6e-15 85.9 53 77.4
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 1.6e-15 85.9 53 77.4
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 1.6e-15 85.9 79 55.7
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 79.2
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 2.1e-15 85.5 53 75.5
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.8e-15 85.1 64 65.6
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 2.8e-15 85.1 53 75.5
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 3.6e-15 84.7 49 83.7
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 3.6e-15 84.7 53 77.4
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.6e-15 84.7 53 75.5
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 75.5
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 75.5
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 75.5
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 75.5
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 75.5
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 75.5
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 77.4
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 77.4
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 4.7e-15 84.3 53 77.4
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.2e-15 84.0 53 75.5
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 6.2e-15 84.0 53 75.5
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 6.2e-15 84.0 53 75.5
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 6.2e-15 84.0 53 75.5
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 8.1e-15 83.6 53 75.5
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 8.1e-15 83.6 75 60.0
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 8.1e-15 83.6 49 79.6
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 8.1e-15 83.6 49 81.6
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 1.1e-14 83.2 53 75.5
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 1.1e-14 83.2 43 90.7
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 1.1e-14 83.2 49 81.6
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.1e-14 83.2 49 81.6
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 1.1e-14 83.2 49 81.6
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 1.4e-14 82.8 53 75.5
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 1.4e-14 82.8 53 73.6
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 1.4e-14 82.8 53 73.6
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.8e-14 82.4 53 77.4
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 1.8e-14 82.4 49 79.6
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 1.8e-14 82.4 49 79.6
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 1.8e-14 82.4 49 79.6
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 1.8e-14 82.4 49 79.6
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-14 82.0 53 73.6
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.4e-14 82.0 53 73.6
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 2.4e-14 82.0 53 69.8
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 3.1e-14 81.6 53 73.6
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 3.1e-14 81.6 53 73.6
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.1e-14 81.6 53 71.7
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 3.1e-14 81.6 49 79.6
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 3.1e-14 81.6 54 74.1
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-14 81.3 53 73.6
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.0e-14 81.3 53 73.6
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 4.0e-14 81.3 48 81.2
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 5.2e-14 80.9 53 75.5
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 5.2e-14 80.9 53 71.7
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 5.2e-14 80.9 53 73.6
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 5.2e-14 80.9 54 74.1
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 6.8e-14 80.5 53 75.5
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 6.8e-14 80.5 53 71.7
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.8e-14 80.5 53 69.8
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 8.9e-14 80.1 53 71.7
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 8.9e-14 80.1 49 77.6
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 1.2e-13 79.7 53 69.8
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 1.2e-13 79.7 53 73.6
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 1.2e-13 79.7 53 73.6
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 1.5e-13 79.3 53 71.7
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-13 79.3 64 64.1
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 1.5e-13 79.3 45 86.7
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 1.5e-13 79.3 54 72.2
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.0e-13 79.0 49 79.6
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.6e-13 78.6 53 71.7
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 3.4e-13 78.2 53 69.8
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 3.4e-13 78.2 53 69.8
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.4e-13 77.8 53 69.8
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 4.4e-13 77.8 53 71.7
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 5.8e-13 77.4 53 69.8
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.9e-13 76.6 64 60.9
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 1.3e-12 76.3 75 53.3
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.3e-12 76.3 51 72.5
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 1.7e-12 75.9 48 75.0
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 1.7e-12 75.9 53 71.7
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 2.2e-12 75.5 53 69.8
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 4.9e-12 74.3 40 90.0
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.9e-12 74.3 53 69.8
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 6.4e-12 73.9 42 83.3
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 6.4e-12 73.9 49 73.5
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 6.4e-12 73.9 53 67.9
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 8.4e-12 73.6 53 66.0
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 1.1e-11 73.2 53 69.8
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 1.1e-11 73.2 54 64.8
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 2.4e-11 72.0 51 68.6
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 3.2e-11 71.6 64 60.9
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 3.2e-11 71.6 64 56.2
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.2e-11 71.6 53 67.9
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 4.1e-11 71.2 53 66.0
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.6e-10 69.3 53 66.0
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 2.1e-10 68.9 38 86.8
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 3.5e-10 68.2 37 89.2
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.0e-10 67.4 48 66.7
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 1.3e-09 66.2 42 71.4
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 1.3e-09 66.2 53 64.2
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 1.7e-09 65.9 53 62.3
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 1.7e-09 65.9 52 63.5
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 2.3e-09 65.5 43 76.7
ClCG02G007580 Citrullus lanatus HOM05D000580 ORTHO05D006815 7.3e-08 60.5 36 83.3
Migut.L00683 Erythranthe guttata HOM05D000580 ORTHO05D006815 7.3e-08 60.5 76 44.7
QL93p1043_0018 Quercus lobata HOM05D000580 ORTHO05D001785 1.2e-07 59.7 35 85.7
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 2.8e-07 58.5 54 53.7
Lalb_Chr23g0274191 Lupinus albus HOM05D000580 ORTHO05D006815 1.1e-06 56.6 38 76.3
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 5.2e-06 54.3 32 71.9
CsaV3_5G028980 Cucumis sativus L. HOM05D000890 ORTHO05D000697 9.0e-06 53.5 44 61.4


User provided reference genes

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