Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.3e-138 496.9 354 100.0
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 2.5e-73 280.0 336 74.1
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.2e-67 261.2 334 72.5
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.3e-66 257.7 328 73.8
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.2e-66 256.9 328 70.7
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 6.5e-66 255.4 339 72.6
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 8.5e-66 255.0 335 71.3
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.9e-65 253.8 328 72.3
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.2e-65 253.1 330 71.8
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 7.2e-65 251.9 340 69.4
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 7.2e-65 251.9 328 70.4
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.6e-64 250.8 326 72.4
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 3.6e-64 249.6 328 71.6
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 6.1e-64 248.8 333 73.0
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 6.1e-64 248.8 333 73.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.0e-64 248.4 301 74.4
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 5.2e-63 245.7 302 62.6
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 8.8e-63 245.0 296 75.7
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 1.2e-62 244.6 327 72.2
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.5e-62 244.2 328 71.0
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 3.4e-62 243.0 328 72.3
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 4.4e-62 242.7 328 71.0
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 7.5e-62 241.9 328 70.7
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 7.5e-62 241.9 338 69.2
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.7e-61 239.6 329 70.5
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 4.8e-61 239.2 326 58.6
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 6.3e-61 238.8 329 71.1
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.8e-60 237.3 356 53.9
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.4e-60 236.9 329 69.9
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 3.1e-60 236.5 328 71.6
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 9.1e-60 235.0 303 73.3
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 1.6e-59 234.2 327 69.1
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.6e-59 234.2 303 73.3
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.0e-59 233.8 336 71.1
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 2.0e-59 233.8 329 69.6
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.5e-59 233.0 351 65.8
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 4.5e-59 232.6 336 67.6
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 5.9e-59 232.3 336 71.7
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 7.7e-59 231.9 299 73.6
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.0e-58 231.5 331 53.2
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.0e-58 231.5 335 67.8
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 1.3e-58 231.1 313 69.0
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 2.9e-58 229.9 327 68.2
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 3.8e-58 229.6 327 68.8
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.8e-58 229.6 330 68.5
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.0e-58 229.2 329 68.4
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 5.0e-58 229.2 334 69.5
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 5.0e-58 229.2 321 65.7
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 5.0e-58 229.2 318 72.3
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 8.6e-58 228.4 337 67.7
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 8.6e-58 228.4 337 69.4
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 8.6e-58 228.4 331 67.7
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.5e-57 227.6 331 52.0
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.5e-57 227.6 329 67.8
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 1.9e-57 227.3 298 70.5
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.5e-57 226.9 327 68.5
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 2.5e-57 226.9 330 67.0
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 7.2e-57 225.3 330 68.8
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 1.6e-56 224.2 296 61.5
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 3.6e-56 223.0 311 70.1
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 6.1e-56 222.2 309 69.9
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.0e-55 219.9 329 56.2
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 4.0e-55 219.5 317 69.4
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-54 218.0 377 62.3
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.5e-54 217.6 338 68.0
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 1.5e-54 217.6 340 65.9
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 2.6e-54 216.9 322 67.1
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 2.6e-54 216.9 330 68.5
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 2.6e-54 216.9 332 68.7
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 3.4e-54 216.5 350 65.4
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 7.5e-54 215.3 336 66.7
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.3e-53 214.5 335 66.0
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 1.3e-53 214.5 331 69.5
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 8.3e-53 211.8 327 68.8
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.8e-52 210.7 337 65.3
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 9.2e-52 208.4 329 67.8
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 3.5e-51 206.5 327 68.5
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 1.0e-50 204.9 311 67.2
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 5.0e-50 202.6 346 65.0
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.5e-49 201.1 330 68.2
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 1.9e-49 200.7 338 64.2
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 2.5e-49 200.3 180 61.1
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 9.5e-49 198.4 306 66.0
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 9.5e-49 198.4 306 66.0
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 9.5e-49 198.4 306 66.0
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.2e-48 198.0 304 71.1
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 2.8e-48 196.8 306 66.0
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 6.1e-48 195.7 306 65.7
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.0e-47 194.9 281 72.6
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 7.5e-46 188.7 346 62.4
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 4.6e-43 179.5 355 57.2
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 1.0e-42 178.3 290 65.5
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 3.0e-42 176.8 307 63.8
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 3.0e-42 176.8 445 33.3
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 3.9e-42 176.4 147 62.6
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 5.6e-41 172.6 233 79.8
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 5.6e-41 172.6 305 62.6
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 5.6e-41 172.6 305 63.6
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 5.6e-41 172.6 327 38.5
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 3.1e-39 166.8 307 61.9
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 4.0e-39 166.4 310 63.5
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 8.9e-39 165.2 294 68.0
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 8.9e-39 165.2 315 65.1
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.5e-38 164.5 341 62.8
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 2.0e-38 164.1 309 61.8
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 2.0e-38 164.1 151 59.6
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 2.6e-38 163.7 331 60.1
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 3.4e-38 163.3 346 59.5
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 5.8e-38 162.5 169 58.0
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 9.8e-38 161.8 347 62.5
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 8.3e-37 158.7 321 48.0
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.4e-36 157.1 321 48.6
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 3.9e-34 149.8 302 59.6
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 7.3e-33 145.6 229 68.1
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 6.8e-31 139.0 270 63.7
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 8.9e-31 138.7 351 52.7
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.3e-26 124.8 277 59.9
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 4.3e-25 119.8 269 61.7
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.6e-24 117.9 275 58.2
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 2.1e-24 117.5 264 60.6
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 3.1e-23 113.6 321 55.5
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.4e-20 104.0 86 84.9
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.1e-19 100.9 101 52.5
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 3.0e-18 97.1 86 81.4
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 8.7e-18 95.5 133 45.1
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 2.8e-16 90.5 252 58.7
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.4e-15 87.4 94 74.5
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 5.3e-15 86.3 222 62.6
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 1.5e-14 84.7 93 67.7
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.7e-13 81.3 220 62.7
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 2.2e-13 80.9 87 70.1
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 3.5e-11 73.6 286 52.8
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 3.0e-10 70.5 208 53.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 5.1e-10 69.7 60 60.0
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 8.7e-10 68.9 58 62.1
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 4.3e-09 66.6 58 60.3
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.4e-07 61.6 52 88.5


User provided reference genes

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