Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 6.0e-275 950.3 496 100.0
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 2.4e-183 646.0 510 71.6
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 2.5e-172 609.4 506 66.6
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 3.6e-171 605.5 514 67.1
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-170 603.2 509 67.0
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 1.4e-167 593.6 503 67.8
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 1.1e-164 583.9 487 69.0
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 1.1e-164 583.9 504 66.1
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.2e-163 580.5 509 64.6
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.1e-162 577.4 500 65.0
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.6e-161 572.8 511 64.8
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 2.2e-160 569.7 502 63.9
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.1e-158 563.1 449 69.3
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.8e-158 561.2 471 67.5
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 1.7e-157 560.1 487 66.7
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.9e-156 556.6 523 63.9
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.3e-156 555.4 499 63.5
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.6e-155 553.5 517 61.5
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 6.2e-155 551.6 499 64.7
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.8e-154 550.1 502 63.5
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.8e-154 550.1 486 65.2
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 5.2e-154 548.5 489 65.0
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.6e-153 546.2 471 65.8
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.4e-153 545.8 512 62.3
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.6e-153 544.7 469 65.9
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 1.3e-152 543.9 491 64.0
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 3.8e-152 542.3 515 61.2
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.8e-152 542.3 519 60.7
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.4e-151 539.7 508 59.1
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 3.2e-151 539.3 486 64.8
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 7.1e-151 538.1 511 61.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 4.6e-150 535.4 482 64.1
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 6.0e-150 535.0 504 62.1
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.3e-149 533.1 500 62.6
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 6.6e-149 531.6 513 59.8
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 8.6e-149 531.2 496 62.3
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.1e-148 530.8 482 62.9
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 1.5e-148 530.4 483 63.6
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.5e-148 530.4 461 65.7
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.9e-148 530.0 476 64.1
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.9e-148 530.0 504 60.7
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 3.3e-148 529.3 399 70.2
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.6e-148 528.5 476 63.9
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 5.6e-148 528.5 495 61.6
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 7.3e-148 528.1 501 62.7
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 9.6e-148 527.7 490 61.2
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.2e-147 527.3 447 65.3
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.2e-147 527.3 501 62.3
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.8e-147 526.2 472 63.6
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 8.1e-147 524.6 431 67.1
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.1e-146 524.2 432 66.0
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.4e-146 523.9 508 61.4
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.4e-146 523.1 481 61.7
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.4e-146 523.1 489 60.3
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 2.4e-146 523.1 498 61.2
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 1.5e-145 520.4 496 62.1
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.0e-145 520.0 509 61.1
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 3.4e-145 519.2 465 62.6
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 4.4e-145 518.8 485 62.3
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 4.4e-145 518.8 466 62.4
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 5.8e-145 518.5 433 64.0
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 9.9e-145 517.7 480 60.6
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.7e-144 516.9 390 72.6
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 1.7e-144 516.9 512 60.2
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.2e-144 516.5 424 68.2
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 2.2e-144 516.5 488 62.1
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.4e-143 513.8 471 61.1
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.9e-143 513.5 494 60.9
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.9e-143 513.5 520 59.0
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 1.9e-143 513.5 444 62.8
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.2e-143 512.7 507 59.8
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 4.2e-143 512.3 455 62.6
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.1e-142 510.0 479 62.0
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 2.1e-142 510.0 483 61.3
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 6.0e-142 508.4 384 70.3
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 1.3e-141 507.3 495 59.8
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.3e-141 507.3 513 59.5
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 3.6e-139 499.2 495 61.0
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 4.8e-139 498.8 505 57.0
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 8.1e-139 498.0 504 57.1
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 8.1e-139 498.0 476 61.6
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 8.1e-139 498.0 517 57.4
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 4.0e-138 495.7 495 59.0
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 6.9e-138 495.0 455 61.5
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 2.0e-137 493.4 489 59.7
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 2.0e-137 493.4 510 58.0
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.3e-136 490.7 500 56.0
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 3.8e-136 489.2 416 65.6
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.8e-136 489.2 518 57.7
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 4.9e-136 488.8 475 60.0
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.2e-135 486.1 391 67.8
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 5.4e-135 485.3 440 59.3
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 7.1e-135 485.0 495 59.4
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.7e-134 483.0 489 59.9
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 3.5e-134 482.6 486 58.6
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 2.3e-133 479.9 506 58.1
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 3.0e-133 479.6 483 58.6
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.0e-133 479.6 475 58.9
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 6.7e-133 478.4 424 62.7
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 6.7e-133 478.4 485 57.3
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 4.3e-132 475.7 486 58.2
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.4e-130 470.7 477 57.4
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 3.1e-130 469.5 481 57.4
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 4.0e-130 469.2 487 57.9
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 4.0e-130 469.2 391 63.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 6.9e-130 468.4 487 57.7
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 6.9e-130 468.4 488 57.4
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 9.0e-130 468.0 478 59.6
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.0e-129 466.8 466 57.3
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 2.0e-129 466.8 481 58.2
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.6e-129 466.5 480 56.7
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 4.5e-129 465.7 485 56.7
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 4.5e-129 465.7 478 58.6
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 5.8e-129 465.3 481 57.0
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 6.4e-128 461.8 483 56.1
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 8.4e-128 461.5 481 59.0
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 9.3e-127 458.0 482 55.6
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.2e-126 457.6 484 56.4
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 6.0e-126 455.3 473 56.4
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.0e-125 454.5 500 55.0
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.3e-125 454.1 467 55.7
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.3e-125 454.1 317 75.4
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.9e-124 450.3 490 54.3
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 9.6e-124 448.0 500 54.4
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.8e-123 445.7 421 61.3
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-121 441.0 435 57.2
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.4e-121 439.5 491 52.3
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.0e-120 438.0 497 53.5
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 2.2e-120 436.8 491 54.0
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.9e-120 436.4 481 54.1
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 7.1e-119 431.8 447 54.6
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 7.1e-119 431.8 473 55.2
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 9.3e-119 431.4 491 52.3
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 9.3e-119 431.4 494 52.2
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.6e-118 430.6 445 56.4
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 2.1e-118 430.3 480 53.5
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.3e-117 427.6 485 53.2
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 1.8e-117 427.2 474 54.2
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 6.7e-117 425.2 482 52.3
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 8.7e-117 424.9 495 52.7
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 7.4e-116 421.8 499 51.5
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-114 417.9 457 54.9
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 1.8e-114 417.2 497 51.1
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 7.9e-110 401.7 382 57.1
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 1.3e-107 394.4 435 55.6
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.0e-105 387.1 279 68.8
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 3.1e-98 363.2 382 52.6
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 3.2e-95 353.2 473 49.7
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.6e-86 324.3 473 42.7
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.7e-86 322.8 354 52.8
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 3.0e-85 320.1 270 64.8
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 4.4e-68 263.1 192 73.4
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 2.3e-61 240.7 382 41.9
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.2e-57 228.4 597 32.2
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 2.6e-52 210.7 195 62.6
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 7.0e-50 202.6 263 46.0
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.1e-41 174.5 137 69.3
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.6e-41 173.3 147 63.3
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 6.2e-38 162.9 129 67.4
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.1e-38 162.5 129 69.0
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.1e-37 162.2 145 66.2
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 1.8e-37 161.4 117 64.1
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 4.9e-35 153.3 367 34.3
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 1.1e-34 152.1 341 35.2
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 3.4e-28 130.6 315 33.3
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 5.8e-28 129.8 99 65.7
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.6e-25 120.2 99 60.6
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.1e-21 107.5 184 40.8
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.1e-21 107.5 184 40.8
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 6.4e-19 99.8 406 26.4
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 8.1e-14 82.8 70 51.4
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.4e-13 82.0 312 29.2
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 1.3e-11 75.5 47 72.3
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 2.4e-10 71.2 109 47.7
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 3.0e-08 64.3 53 60.4
Thecc.02G021900 Theobroma cacao HOM05D003925 ORTHO05D409199 2.8e-06 57.8 70 48.6


User provided reference genes

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