Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 1.5e-19 98.6 51 100.0
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.5e-19 98.6 51 100.0
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 1.2e-16 89.0 51 86.3
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 1.5e-16 88.6 51 88.2
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 2.6e-16 87.8 51 86.3
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 2.6e-16 87.8 51 82.4
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 3.4e-16 87.4 51 84.3
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 3.4e-16 87.4 51 86.3
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 3.4e-16 87.4 51 84.3
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 3.4e-16 87.4 51 82.4
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 3.4e-16 87.4 51 82.4
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 4.4e-16 87.0 51 84.3
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 4.4e-16 87.0 51 82.4
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 5.8e-16 86.7 51 80.4
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 5.8e-16 86.7 51 82.4
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 7.6e-16 86.3 51 84.3
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 7.6e-16 86.3 51 82.4
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 9.9e-16 85.9 51 84.3
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 9.9e-16 85.9 51 84.3
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 1.3e-15 85.5 51 80.4
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 1.3e-15 85.5 51 82.4
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 1.3e-15 85.5 51 82.4
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 1.3e-15 85.5 51 78.4
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 1.3e-15 85.5 51 82.4
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 2.2e-15 84.7 51 84.3
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 2.9e-15 84.3 51 82.4
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 3.8e-15 84.0 51 82.4
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 3.8e-15 84.0 51 80.4
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 4.9e-15 83.6 51 80.4
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 6.4e-15 83.2 51 78.4
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 8.4e-15 82.8 51 78.4
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 8.4e-15 82.8 51 76.5
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 8.4e-15 82.8 51 82.4
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 8.4e-15 82.8 51 76.5
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 8.4e-15 82.8 49 81.6
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 8.4e-15 82.8 51 78.4
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 8.4e-15 82.8 51 80.4
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 8.4e-15 82.8 50 80.0
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 1.1e-14 82.4 51 82.4
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 1.1e-14 82.4 51 80.4
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 1.1e-14 82.4 51 78.4
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 1.1e-14 82.4 51 80.4
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 1.4e-14 82.0 51 76.5
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 1.4e-14 82.0 51 82.4
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 1.9e-14 81.6 51 80.4
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 1.9e-14 81.6 51 78.4
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 2.4e-14 81.3 49 79.6
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 2.4e-14 81.3 50 78.0
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 78.4
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 78.4
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 80.4
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 3.2e-14 80.9 50 78.0
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 76.5
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 74.5
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 74.5
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 3.2e-14 80.9 49 81.6
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 3.2e-14 80.9 49 81.6
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 76.5
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 76.5
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 3.2e-14 80.9 51 76.5
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 4.2e-14 80.5 51 72.5
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 4.2e-14 80.5 51 74.5
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 5.4e-14 80.1 51 78.4
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 5.4e-14 80.1 51 78.4
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 5.4e-14 80.1 51 76.5
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 5.4e-14 80.1 51 78.4
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 9.2e-14 79.3 51 74.5
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 1.2e-13 79.0 51 76.5
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 1.2e-13 79.0 51 76.5
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 1.2e-13 79.0 51 72.5
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 1.2e-13 79.0 51 76.5
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 1.2e-13 79.0 51 74.5
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 1.6e-13 78.6 51 76.5
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 1.6e-13 78.6 51 76.5
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 1.6e-13 78.6 51 76.5
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 1.6e-13 78.6 51 76.5
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 2.1e-13 78.2 51 74.5
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 2.7e-13 77.8 51 74.5
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 2.7e-13 77.8 51 74.5
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 2.7e-13 77.8 51 74.5
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 2.7e-13 77.8 51 74.5
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 2.7e-13 77.8 51 74.5
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 3.5e-13 77.4 51 70.6
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 3.5e-13 77.4 51 74.5
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 4.6e-13 77.0 51 72.5
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 6.0e-13 76.6 51 72.5
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 6.0e-13 76.6 49 75.5
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 6.0e-13 76.6 49 75.5
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 6.0e-13 76.6 51 72.5
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 6.0e-13 76.6 51 72.5
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 6.0e-13 76.6 51 72.5
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 6.0e-13 76.6 51 72.5
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 6.0e-13 76.6 51 72.5
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 7.8e-13 76.3 51 72.5
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 1.0e-12 75.9 51 72.5
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 1.3e-12 75.5 51 70.6
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 1.3e-12 75.5 51 70.6
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 1.3e-12 75.5 51 70.6
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 1.7e-12 75.1 51 70.6
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 1.7e-12 75.1 51 68.6
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 2.3e-12 74.7 50 74.0
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 2.3e-12 74.7 51 70.6
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 2.3e-12 74.7 51 68.6
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 3.0e-12 74.3 51 70.6
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 3.0e-12 74.3 51 72.5
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 3.9e-12 73.9 49 75.5
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 3.9e-12 73.9 51 70.6
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 3.9e-12 73.9 51 68.6
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 5.1e-12 73.6 51 68.6
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 5.1e-12 73.6 51 68.6
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 5.1e-12 73.6 51 68.6
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 5.1e-12 73.6 51 68.6
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 5.1e-12 73.6 51 68.6
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 5.1e-12 73.6 51 68.6
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 5.1e-12 73.6 51 66.7
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 6.6e-12 73.2 51 66.7
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 1.5e-11 72.0 51 66.7
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 1.5e-11 72.0 51 70.6
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 1.5e-11 72.0 51 66.7
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 1.5e-11 72.0 51 66.7
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 2.5e-11 71.2 51 64.7
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 4.3e-11 70.5 49 67.3
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 4.3e-11 70.5 51 64.7
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 4.3e-11 70.5 51 64.7
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 4.3e-11 70.5 51 64.7
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 9.6e-11 69.3 51 66.7
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 9.6e-11 69.3 51 66.7
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 9.6e-11 69.3 51 62.7
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 2.8e-10 67.8 49 65.3
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 1.2e-08 62.4 51 54.9
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 1.2e-08 62.4 51 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 2.0e-08 61.6 51 51.0
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 2.6e-08 61.2 47 55.3
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 2.6e-08 61.2 51 56.9
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 3.4e-08 60.8 37 75.7
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 7.6e-08 59.7 49 59.2
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 1.7e-07 58.5 51 54.9
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 1.1e-06 55.8 51 51.0
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 1.4e-06 55.5 51 51.0
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 3.2e-06 54.3 51 47.1


User provided reference genes

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