Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2954.9 1489 100.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1862.4 1478 63.9
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1808.9 1511 60.7
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1805.8 1499 61.5
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1731.1 1513 59.3
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1715.3 1505 58.8
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1710.3 1443 60.8
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1696.0 1737 52.6
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1683.3 1534 57.4
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1669.4 1535 57.5
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1667.1 1504 56.9
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1661.4 1504 57.2
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1649.4 1495 56.9
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1634.4 1466 57.9
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1601.6 1509 56.0
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1591.2 1503 56.4
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1561.2 1518 54.8
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1557.3 1497 54.5
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1557.3 1516 54.3
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1557.0 1502 55.3
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1553.1 1512 54.3
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1551.6 1501 56.0
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1549.3 1511 53.0
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1547.3 1503 54.2
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1546.9 1507 54.5
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1546.9 1542 54.4
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1546.6 1500 54.5
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1537.7 1494 54.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1532.7 1510 54.0
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1531.5 1511 52.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1530.4 1511 54.5
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1526.1 1507 54.1
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1515.0 1506 53.5
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1509.6 1504 52.7
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1506.1 1609 51.6
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1502.3 1502 52.5
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1501.9 1500 53.6
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1501.9 1495 52.9
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1500.3 1493 52.6
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1496.5 1502 53.2
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1494.2 1506 52.2
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1493.8 1500 52.9
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1490.7 1490 53.1
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1488.4 1497 52.7
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1483.4 1495 52.8
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1483.0 1520 51.8
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1479.9 1494 52.5
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1478.8 1494 52.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1476.8 1495 52.4
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1475.7 1522 51.2
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1475.7 1522 51.2
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1473.8 1496 52.4
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1468.4 1503 52.0
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1464.1 1507 52.8
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1463.0 1494 52.3
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1456.8 1433 53.5
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1444.9 1523 50.9
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1444.1 1507 50.5
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1430.6 1510 50.8
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1416.4 1495 51.0
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1403.3 1506 49.9
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1397.5 1300 55.5
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1354.0 1200 58.4
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1346.3 1491 48.6
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1329.7 1501 46.1
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1316.6 1513 47.5
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1310.4 1230 55.3
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1288.9 1508 47.1
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1287.3 1511 47.4
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1278.1 1511 46.9
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1277.7 1505 46.8
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1274.2 1518 46.9
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1265.4 1527 46.8
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1263.8 1510 46.8
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1258.0 1505 47.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1257.7 1379 49.4
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1250.7 1500 46.1
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1245.7 1506 45.9
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1238.4 1507 45.7
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1235.3 1504 45.6
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1232.6 1540 45.3
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1232.2 1507 45.5
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1222.6 1534 44.9
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1218.8 1161 55.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1216.8 1536 44.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1180.6 1051 59.0
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1161.4 1134 54.1
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1159.1 1090 55.4
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1155.2 1291 48.4
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1146.0 1509 42.7
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1075.5 1119 52.6
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 5.2e-298 1028.5 980 55.2
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 4.3e-260 902.5 1124 44.0
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.5e-244 850.1 1141 41.8
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 8.1e-243 845.1 1524 35.8
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 3.4e-233 813.1 1520 34.9
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 6.0e-230 802.4 1537 34.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.9e-216 756.9 1019 43.8
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.5e-216 755.4 967 43.8
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 2.2e-200 704.1 585 61.9
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.6e-198 696.8 602 59.8
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 5.7e-196 689.5 573 61.3
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 7.0e-194 682.6 1399 33.2
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-185 655.2 1017 40.1
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 7.2e-183 646.0 1015 40.0
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 4.7e-182 643.3 1016 39.9
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.4e-178 631.7 566 57.1
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 7.2e-175 619.4 643 52.4
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.6e-169 601.7 624 52.7
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.4e-141 508.8 569 50.1
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 6.4e-131 473.4 477 54.1
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.6e-128 463.4 570 44.6
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.3e-123 449.1 563 44.4
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.0e-115 422.9 1029 31.8
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 5.9e-100 370.5 530 43.2
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-96 359.8 1005 28.3
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.1e-95 356.3 499 41.9
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 3.8e-83 314.7 450 41.3
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 7.2e-82 310.5 459 40.5
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 8.2e-78 297.0 536 35.3
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 7.7e-76 290.4 334 47.0
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.9e-74 285.8 320 49.1
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.2e-72 277.7 342 43.6
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.5e-71 276.2 457 40.9
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.4e-69 269.6 291 47.1
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.4e-69 269.6 822 29.8
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 3.5e-68 265.0 396 43.7
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.2e-65 256.5 268 48.9
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-63 250.0 380 39.7
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 5.7e-63 247.7 212 59.9
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.8e-61 242.7 210 56.7
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 2.4e-61 242.3 468 32.7
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.9e-59 235.3 246 51.2
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.3e-58 231.9 370 36.2
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.4e-55 221.5 293 42.3
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 7.0e-53 214.2 196 55.1
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.9e-52 211.1 316 38.9
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-45 190.3 226 46.0
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 1.6e-44 186.4 383 35.2
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 1.7e-43 183.0 277 38.3
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.4e-37 163.3 130 60.0
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.4e-37 163.3 198 42.9
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 1.4e-37 163.3 183 47.0
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 3.0e-35 155.6 197 45.2
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 2.5e-34 152.5 116 62.1
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 8.9e-32 144.1 114 56.1
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.9e-30 139.0 175 46.9
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 6.0e-28 131.3 118 52.5
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 7.8e-28 131.0 189 42.9
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 1.7e-27 129.8 147 45.6
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 1.1e-26 127.1 116 51.7
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 7.3e-26 124.4 116 56.0
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 3.4e-23 115.5 748 22.7
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.4e-21 110.2 111 49.5
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 3.2e-13 82.4 647 21.3
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.2e-12 80.5 96 46.9
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 6.0e-12 78.2 96 45.8
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 3.6e-09 68.9 61 54.1
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 2.0e-07 63.2 53 54.7
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.0e-07 63.2 42 66.7
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 5.8e-07 61.6 71 49.3


User provided reference genes

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