Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 6.1e-100 367.5 184 100.0
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.3e-86 323.2 184 85.9
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.3e-86 323.2 181 86.2
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 3.9e-86 321.6 181 86.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.1e-85 320.1 181 85.1
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.5e-85 319.7 181 85.6
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.9e-85 319.3 181 85.1
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.9e-85 319.3 181 85.1
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.5e-85 318.9 181 85.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 2.5e-85 318.9 181 84.0
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 4.3e-85 318.2 181 83.4
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 7.3e-85 317.4 181 85.1
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 9.5e-85 317.0 181 84.0
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 182 81.9
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 182 81.9
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 1.2e-84 316.6 181 85.6
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.1e-84 315.8 181 86.2
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 2.1e-84 315.8 181 86.2
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 2.1e-84 315.8 182 83.5
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.1e-84 315.8 181 82.9
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.8e-84 315.5 181 83.4
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.8e-84 315.5 181 83.4
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.8e-84 315.5 181 84.0
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 3.6e-84 315.1 181 84.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 3.6e-84 315.1 181 84.0
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.7e-84 314.7 182 81.3
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 6.2e-84 314.3 181 83.4
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.1e-83 313.5 182 82.4
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.4e-83 313.2 181 83.4
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 2.3e-83 312.4 181 82.3
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 3.1e-83 312.0 181 81.8
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.1e-83 312.0 182 83.0
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 3.1e-83 312.0 181 83.4
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 3.1e-83 312.0 188 80.9
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.0e-83 311.6 181 81.8
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 6.8e-83 310.8 181 84.5
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.2e-82 310.1 184 81.0
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.2e-82 310.1 181 82.3
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 2.0e-82 309.3 181 82.3
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.6e-82 308.9 182 82.4
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 80.7
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 82.3
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 82.3
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 9.8e-82 307.0 181 80.7
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 9.8e-82 307.0 181 80.7
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 9.8e-82 307.0 184 79.3
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 2.2e-81 305.8 181 81.8
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 2.2e-81 305.8 184 79.3
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.2e-81 305.8 181 81.8
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.2e-81 305.8 181 81.8
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.2e-81 305.8 181 81.8
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 2.9e-81 305.4 181 82.3
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.9e-81 305.4 182 81.3
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 80.7
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 81.8
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 6.4e-81 304.3 181 79.6
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 6.4e-81 304.3 181 80.7
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 6.4e-81 304.3 181 79.6
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 6.4e-81 304.3 181 82.3
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.1
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 80.1
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 8.3e-81 303.9 182 80.8
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 8.3e-81 303.9 181 81.2
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 81.2
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.9e-80 302.8 181 79.0
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 3.2e-80 302.0 181 81.2
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.7
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 79.0
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 7.1e-80 300.8 181 80.7
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 7.1e-80 300.8 181 79.0
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 80.1
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 80.1
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 80.1
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 2.1e-79 299.3 181 78.5
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 79.0
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 77.9
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 77.9
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 77.3
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 4.6e-79 298.1 181 79.6
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 6.0e-79 297.7 181 77.3
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 78.5
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 78.5
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 7.8e-79 297.4 181 79.6
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 79.0
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.0e-78 297.0 184 79.3
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.3e-78 296.6 181 78.5
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 1.3e-78 296.6 181 79.0
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.7e-78 296.2 181 77.9
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.3e-78 295.8 181 78.5
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.3e-78 295.8 181 77.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 5.1e-78 294.7 181 77.9
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 6.6e-78 294.3 181 79.0
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 77.3
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.9e-77 292.7 181 77.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.9e-77 292.7 181 77.9
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 77.9
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 76.6
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 77.9
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 77.9
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 77.9
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 76.8
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 7.3e-77 290.8 184 76.6
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 77.9
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 76.1
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.4e-75 286.6 184 76.1
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 3.1e-75 285.4 180 78.3
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 8.9e-75 283.9 181 75.7
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.3e-73 280.0 181 75.1
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.2e-73 279.3 184 72.8
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 6.4e-73 277.7 226 63.3
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 6.4e-73 277.7 181 74.6
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.4e-72 276.6 184 72.8
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.4e-72 275.8 181 71.3
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 4.1e-72 275.0 181 70.7
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.2e-71 273.5 181 72.4
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 8.6e-70 267.3 185 70.3
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 4.3e-69 265.0 217 63.6
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 5.6e-69 264.6 155 80.6
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 5.6e-69 264.6 181 68.0
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.6e-68 263.1 182 67.0
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 8.1e-68 260.8 181 74.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 5.2e-67 258.1 155 81.3
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 9.9e-66 253.8 181 72.4
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 9.9e-66 253.8 150 78.7
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 8.4e-65 250.8 181 65.7
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 5.4e-64 248.1 150 80.7
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 8.7e-62 240.7 181 66.9
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.5e-61 239.2 188 68.1
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 9.6e-61 237.3 181 67.4
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 9.0e-59 230.7 138 78.3
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 9.3e-56 220.7 181 63.0
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 3.9e-54 215.3 175 63.4
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 6.6e-54 214.5 136 74.3
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.9e-53 213.0 181 61.9
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 4.8e-52 208.4 155 67.1
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 5.8e-50 201.4 158 63.3
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.4e-48 194.9 151 62.3
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.2e-47 193.7 177 58.2
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 6.0e-47 191.4 186 51.6
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.5e-45 186.8 151 61.6
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.4e-43 180.3 132 65.2
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 4.0e-43 178.7 158 58.9
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 5.8e-42 174.9 100 83.0
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.3e-41 173.7 100 82.0
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.1e-39 166.4 106 72.6
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 6.0e-39 164.9 98 77.6
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.0e-38 162.5 98 78.6
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.9e-38 162.2 97 77.3
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.3e-37 159.1 134 60.4
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.1e-32 144.1 99 67.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 3.2e-32 142.5 105 64.8
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 4.2e-32 142.1 81 84.0
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.4e-27 126.3 81 74.1
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.5e-26 123.6 76 77.6
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 5.9e-26 121.7 106 58.5
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.2e-25 119.8 100 59.0
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.8e-19 100.1 68 63.2
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.9e-17 92.8 52 84.6
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.9e-16 90.1 104 49.0
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 2.5e-16 89.7 187 36.4
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.9e-08 63.5 37 73.0
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 2.5e-08 63.2 181 30.4
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.2e-07 60.8 81 43.2
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 5.2e-06 55.5 140 24.3


User provided reference genes

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