Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 9.0e-65 250.0 116 100.0
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 8.7e-60 233.4 116 90.5
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 9.6e-59 229.9 122 88.5
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 1.3e-58 229.6 116 88.8
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 6.2e-58 227.3 116 87.9
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.8e-57 225.7 114 88.6
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 4.0e-57 224.6 114 87.7
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 6.9e-57 223.8 117 88.9
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 6.9e-57 223.8 117 88.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 9.0e-57 223.4 117 88.0
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.2e-56 223.0 112 89.3
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.2e-56 223.0 112 89.3
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.2e-56 223.0 112 89.3
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 1.5e-56 222.6 117 87.2
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.5e-56 222.6 117 87.2
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 2.0e-56 222.2 115 87.8
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 2.6e-56 221.9 116 87.9
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 3.4e-56 221.5 112 88.4
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 4.5e-56 221.1 114 86.8
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 5.8e-56 220.7 117 87.2
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 5.8e-56 220.7 114 86.0
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 7.6e-56 220.3 112 88.4
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 7.6e-56 220.3 117 87.2
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 7.6e-56 220.3 119 85.7
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.0e-55 219.9 117 86.3
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 2.9e-55 218.4 112 87.5
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.8e-55 218.0 117 86.3
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 3.8e-55 218.0 117 86.3
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 3.8e-55 218.0 117 86.3
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 4.9e-55 217.6 118 83.1
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 4.9e-55 217.6 117 83.8
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 4.9e-55 217.6 117 83.8
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 6.5e-55 217.2 112 88.4
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 6.5e-55 217.2 116 84.5
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 6.5e-55 217.2 117 83.8
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 8.4e-55 216.9 117 85.5
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 8.4e-55 216.9 114 86.8
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 1.1e-54 216.5 117 85.5
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 1.4e-54 216.1 112 86.6
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 3.2e-54 214.9 112 84.8
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 3.2e-54 214.9 119 83.2
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 3.2e-54 214.9 112 86.6
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 4.2e-54 214.5 112 87.5
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 4.2e-54 214.5 110 87.3
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 4.2e-54 214.5 112 86.6
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 5.5e-54 214.2 114 85.1
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 5.5e-54 214.2 114 85.1
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 1.2e-53 213.0 118 83.9
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.2e-53 213.0 112 86.6
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.2e-53 213.0 117 82.1
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 1.6e-53 212.6 117 82.1
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.6e-53 212.6 117 82.1
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 2.1e-53 212.2 113 84.1
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 2.1e-53 212.2 112 83.0
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 2.7e-53 211.8 107 88.8
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 2.7e-53 211.8 112 85.7
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 3.5e-53 211.5 116 82.8
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.6e-53 211.1 112 83.0
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.6e-53 211.1 112 83.0
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 6.1e-53 210.7 117 82.1
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 6.1e-53 210.7 112 83.9
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 6.1e-53 210.7 118 80.5
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 7.9e-53 210.3 117 81.2
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 7.9e-53 210.3 117 81.2
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 7.9e-53 210.3 117 81.2
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 7.9e-53 210.3 117 81.2
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 1.0e-52 209.9 114 83.3
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.0e-52 209.9 112 83.0
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.3e-52 209.5 112 82.1
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 1.3e-52 209.5 119 81.5
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.8e-52 209.1 116 80.2
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.8e-52 209.1 117 81.2
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.8e-52 209.1 117 81.2
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 2.3e-52 208.8 115 82.6
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.0e-52 208.4 112 82.1
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 6.7e-52 207.2 117 80.3
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.5e-51 206.1 118 79.7
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.3e-51 204.9 116 77.6
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 3.3e-51 204.9 116 78.4
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 3.3e-51 204.9 112 79.5
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 4.3e-51 204.5 111 84.7
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 4.3e-51 204.5 113 79.6
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 7.4e-51 203.8 114 80.7
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 7.4e-51 203.8 114 80.7
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 9.7e-51 203.4 112 80.4
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 9.7e-51 203.4 115 80.0
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 1.3e-50 203.0 112 78.6
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.6e-50 202.6 110 81.8
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 2.8e-50 201.8 112 79.5
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.8e-50 201.8 114 74.6
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 2.8e-50 201.8 112 79.5
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 3.7e-50 201.4 114 80.7
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 4.8e-50 201.1 117 77.8
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 6.3e-50 200.7 118 77.1
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 1.1e-49 199.9 100 92.0
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 1.4e-49 199.5 117 76.9
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 1.4e-49 199.5 117 76.9
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 1.4e-49 199.5 117 76.9
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 2.4e-49 198.7 110 79.1
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 4.1e-49 198.0 110 80.0
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 4.1e-49 198.0 110 80.0
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 1.2e-48 196.4 100 90.0
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.5e-48 196.1 148 64.2
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 2.0e-48 195.7 97 88.7
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 2.6e-48 195.3 100 88.0
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 3.4e-48 194.9 100 89.0
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 7.7e-48 193.7 112 78.6
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 1.3e-47 193.0 112 78.6
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-47 193.0 112 78.6
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-47 193.0 112 78.6
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-47 193.0 112 78.6
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.3e-47 193.0 112 78.6
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 6.5e-47 190.7 101 82.2
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 8.5e-47 190.3 101 86.1
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 9.4e-46 186.8 101 84.2
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 6.1e-45 184.1 100 83.0
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 6.1e-45 184.1 110 78.2
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 7.9e-45 183.7 95 86.3
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 7.9e-45 183.7 141 61.7
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.4e-44 183.0 108 72.2
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 3.9e-44 181.4 110 70.0
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.1e-43 179.9 112 69.6
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 1.1e-43 179.9 112 69.6
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 1.5e-43 179.5 128 68.0
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 2.5e-43 178.7 111 65.8
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.5e-43 178.7 110 70.0
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.5e-43 178.7 110 70.0
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 1.3e-42 176.4 151 57.6
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 4.8e-42 174.5 109 68.8
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 4.5e-40 167.9 108 65.7
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 5.0e-39 164.5 79 91.1
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 7.2e-38 160.6 97 72.2
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 7.9e-37 157.1 79 87.3
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.0e-36 155.2 78 87.2
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 5.1e-36 154.5 74 90.5
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 8.8e-36 153.7 78 84.6
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.0e-35 152.5 79 88.6
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.4e-33 146.4 78 79.5
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 3.1e-33 145.2 99 75.8
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.1e-30 136.7 74 79.7
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 2.5e-30 135.6 104 51.9
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 2.1e-29 132.5 92 58.7
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 8.8e-28 127.1 100 69.0
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 1.3e-26 123.2 97 51.5
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 6.5e-23 110.9 80 70.0
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 7.2e-22 107.5 81 65.4
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 3.4e-19 98.6 63 65.1
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 3.4e-19 98.6 63 65.1
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 3.4e-19 98.6 63 65.1
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 2.2e-18 95.9 99 44.4
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 1.2e-16 90.1 61 70.5
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 1.6e-16 89.7 88 43.2
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 2.0e-16 89.4 57 68.4
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 3.5e-16 88.6 155 39.4
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 9.4e-14 80.5 81 56.8
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.8e-12 76.3 41 80.5
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 3.7e-10 68.6 83 37.3
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 4.8e-10 68.2 38 78.9
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 5.9e-08 61.2 80 46.2


User provided reference genes

Program Settings