Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0006330 Simmondsia chinensis HOM05D003809 ORTHO05D003935 2.1e-76 288.9 138 100.0
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 2.0e-66 255.8 124 100.0
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 1.2e-12 77.0 134 38.8
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 8.1e-12 74.3 78 48.7
Haze_20987 Corylus avellana HOM05D003809 ORTHO05D003935 8.1e-12 74.3 49 65.3
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.1e-11 73.9 68 50.0
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 1.4e-11 73.6 49 59.2
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 1.4e-11 73.6 136 33.8
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 1.8e-11 73.2 49 65.3
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 1.8e-11 73.2 49 65.3
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.8e-11 73.2 64 53.1
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 1.8e-11 73.2 76 47.4
FAN05G1413 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.3e-11 72.8 64 53.1
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.3e-11 72.8 64 53.1
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.3e-11 72.8 82 48.8
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 2.3e-11 72.8 130 35.4
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 3.1e-11 72.4 51 54.9
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 4.0e-11 72.0 44 65.9
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 4.0e-11 72.0 84 46.4
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 5.2e-11 71.6 138 37.0
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 6.8e-11 71.2 44 63.6
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 6.8e-11 71.2 44 65.9
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 6.8e-11 71.2 45 64.4
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 8.9e-11 70.9 44 63.6
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.2e-10 70.5 44 63.6
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.2e-10 70.5 44 63.6
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.2e-10 70.5 132 36.4
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 1.2e-10 70.5 60 56.7
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 1.5e-10 70.1 44 65.9
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 2.0e-10 69.7 44 63.6
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 2.0e-10 69.7 93 43.0
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 2.0e-10 69.7 64 50.0
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 2.0e-10 69.7 101 39.6
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 2.6e-10 69.3 70 51.4
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 2.6e-10 69.3 42 64.3
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 2.6e-10 69.3 44 61.4
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 2.6e-10 69.3 77 45.5
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.6e-10 69.3 48 62.5
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 2.6e-10 69.3 49 55.1
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 2.6e-10 69.3 132 36.4
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 3.4e-10 68.9 89 41.6
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 3.4e-10 68.9 84 45.2
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 3.4e-10 68.9 42 61.9
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 3.4e-10 68.9 49 57.1
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 3.4e-10 68.9 44 61.4
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 3.4e-10 68.9 49 53.1
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 3.4e-10 68.9 81 44.4
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 3.4e-10 68.9 44 61.4
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 3.4e-10 68.9 43 67.4
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 4.4e-10 68.6 80 45.0
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 4.4e-10 68.6 46 58.7
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 4.4e-10 68.6 138 37.0
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 4.4e-10 68.6 56 53.6
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 4.4e-10 68.6 68 44.1
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 4.4e-10 68.6 68 44.1
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 4.4e-10 68.6 43 62.8
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 5.8e-10 68.2 82 45.1
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 5.8e-10 68.2 44 56.8
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 5.8e-10 68.2 44 61.4
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 5.8e-10 68.2 44 63.6
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 7.5e-10 67.8 44 61.4
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 7.5e-10 67.8 44 61.4
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 7.5e-10 67.8 44 59.1
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 7.5e-10 67.8 71 46.5
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 9.8e-10 67.4 44 61.4
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 9.8e-10 67.4 44 61.4
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 9.8e-10 67.4 49 57.1
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 9.8e-10 67.4 116 36.2
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 9.8e-10 67.4 44 61.4
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 9.8e-10 67.4 83 43.4
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 1.3e-09 67.0 44 59.1
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 1.3e-09 67.0 122 33.6
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 1.3e-09 67.0 44 61.4
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 1.3e-09 67.0 44 61.4
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 1.3e-09 67.0 82 40.2
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.7e-09 66.6 42 59.5
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 1.7e-09 66.6 43 60.5
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.7e-09 66.6 42 64.3
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 2.2e-09 66.2 44 59.1
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 2.2e-09 66.2 82 43.9
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 2.2e-09 66.2 44 59.1
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 2.2e-09 66.2 44 56.8
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 2.9e-09 65.9 44 56.8
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 2.9e-09 65.9 79 39.2
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 2.9e-09 65.9 106 37.7
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 2.9e-09 65.9 44 56.8
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 2.9e-09 65.9 44 56.8
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 2.9e-09 65.9 44 56.8
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 3.7e-09 65.5 44 59.1
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 3.7e-09 65.5 44 59.1
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 3.7e-09 65.5 44 59.1
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 3.7e-09 65.5 44 59.1
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 3.7e-09 65.5 44 59.1
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 3.7e-09 65.5 44 59.1
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 3.7e-09 65.5 108 38.9
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 3.7e-09 65.5 50 52.0
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 4.9e-09 65.1 35 71.4
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 6.4e-09 64.7 79 39.2
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 6.4e-09 64.7 139 31.7
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 6.4e-09 64.7 42 59.5
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 6.4e-09 64.7 44 59.1
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 8.3e-09 64.3 42 59.5
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 8.3e-09 64.3 49 55.1
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 8.3e-09 64.3 53 47.2
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 8.3e-09 64.3 53 50.9
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 8.3e-09 64.3 44 56.8
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 8.3e-09 64.3 44 59.1
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 8.3e-09 64.3 53 50.9
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.1e-08 63.9 82 41.5
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 1.1e-08 63.9 81 42.0
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 1.4e-08 63.5 50 46.0
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.4e-08 63.5 44 52.3
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.4e-08 63.5 81 42.0
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.4e-08 63.5 44 54.5
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 1.4e-08 63.5 44 56.8
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 1.9e-08 63.2 93 38.7
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-08 63.2 44 52.3
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.9e-08 63.2 44 52.3
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-08 63.2 44 52.3
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 1.9e-08 63.2 124 35.5
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 1.9e-08 63.2 85 40.0
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 1.9e-08 63.2 85 36.5
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 2.4e-08 62.8 44 52.3
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 3.2e-08 62.4 86 39.5
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 3.2e-08 62.4 42 57.1
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 3.2e-08 62.4 119 31.1
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 4.1e-08 62.0 98 38.8
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 4.1e-08 62.0 82 43.9
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 5.4e-08 61.6 93 38.7
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 5.4e-08 61.6 44 52.3
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 7.1e-08 61.2 44 56.8
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 9.2e-08 60.8 136 34.6
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 9.2e-08 60.8 44 52.3
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 1.2e-07 60.5 108 32.4
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 1.2e-07 60.5 42 52.4
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 1.6e-07 60.1 44 50.0
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 2.1e-07 59.7 66 43.9
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 2.7e-07 59.3 131 29.8
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 3.5e-07 58.9 45 53.3
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 3.5e-07 58.9 44 52.3
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 3.5e-07 58.9 46 47.8
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 3.5e-07 58.9 45 53.3
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 3.5e-07 58.9 40 57.5
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 4.6e-07 58.5 45 53.3
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 4.6e-07 58.5 42 57.1
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 4.6e-07 58.5 42 52.4
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 6.0e-07 58.2 89 40.4
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 7.8e-07 57.8 73 35.6
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 7.8e-07 57.8 49 49.0
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 7.8e-07 57.8 42 54.8
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 1.0e-06 57.4 47 48.9
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 1.3e-06 57.0 54 42.6
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 1.3e-06 57.0 54 42.6
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 1.7e-06 56.6 73 35.6
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 1.7e-06 56.6 73 39.7
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 2.3e-06 56.2 78 41.0
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 5.1e-06 55.1 44 52.3


User provided reference genes

Program Settings