Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 1.0e-193 679.9 335 100.0
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 1.8e-142 509.6 325 76.6
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 2.5e-139 499.2 324 75.3
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 2.5e-139 499.2 333 73.0
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 5.5e-139 498.0 326 75.2
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 2.3e-137 492.7 335 71.3
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 3.0e-137 492.3 353 69.7
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 3.9e-137 491.9 314 75.5
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.9e-136 489.6 329 73.9
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 5.7e-136 488.0 329 73.6
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 2.2e-135 486.1 330 73.6
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 2.2e-135 486.1 329 73.6
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 2.8e-135 485.7 328 72.3
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 8.2e-135 484.2 340 69.7
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 3.1e-134 482.3 329 73.3
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 2.6e-133 479.2 306 75.2
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 3.4e-133 478.8 323 71.8
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 4.5e-133 478.4 291 77.0
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 4.5e-133 478.4 312 74.4
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 1.3e-132 476.9 327 72.5
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 1.7e-132 476.5 314 73.2
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 2.2e-132 476.1 326 70.6
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 2.9e-132 475.7 290 77.6
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 3.8e-132 475.3 328 72.6
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 5.0e-132 474.9 312 74.0
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 6.5e-132 474.6 289 76.5
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 6.5e-132 474.6 289 76.8
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 7.2e-131 471.1 331 70.7
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 9.4e-131 470.7 314 73.2
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 9.4e-131 470.7 327 70.9
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 2.7e-130 469.2 312 72.1
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 3.6e-130 468.8 314 73.2
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 3.6e-130 468.8 313 72.5
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 4.6e-130 468.4 328 69.5
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.4e-129 466.8 312 71.5
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 1.8e-129 466.5 319 70.8
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 2.3e-129 466.1 323 70.9
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 3.0e-129 465.7 312 71.2
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 5.1e-129 464.9 324 70.1
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 2.6e-128 462.6 325 69.8
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 4.4e-128 461.8 316 70.9
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 5.7e-128 461.5 324 71.3
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 5.7e-128 461.5 327 69.4
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 7.4e-128 461.1 330 70.0
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 7.4e-128 461.1 326 70.9
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 2.2e-127 459.5 313 70.6
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 8.2e-127 457.6 312 71.8
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 1.8e-126 456.4 330 67.9
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.8e-126 456.4 324 69.8
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 2.4e-126 456.1 315 68.9
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 3.1e-126 455.7 271 78.6
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 6.9e-126 454.5 323 67.5
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 1.2e-125 453.8 324 68.5
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 2.0e-125 453.0 333 67.6
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 5.9e-125 451.4 331 68.0
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 7.7e-125 451.1 327 67.6
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 1.7e-124 449.9 307 70.4
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 3.8e-124 448.7 324 70.1
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 6.5e-124 448.0 316 69.3
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 1.1e-123 447.2 333 66.7
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 2.1e-122 443.0 307 69.1
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 2.7e-122 442.6 315 69.2
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 1.0e-121 440.7 281 73.3
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 2.0e-120 436.4 336 67.6
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 2.0e-120 436.4 329 65.7
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 2.6e-120 436.0 333 65.5
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 3.3e-120 435.6 307 70.0
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 4.4e-120 435.3 307 70.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 5.7e-120 434.9 299 69.9
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 9.7e-120 434.1 349 63.6
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 9.7e-120 434.1 349 63.6
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 2.8e-119 432.6 333 64.9
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 4.8e-119 431.8 307 67.8
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 4.8e-119 431.8 335 65.1
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 8.2e-119 431.0 349 63.3
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 8.2e-119 431.0 349 63.3
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 8.2e-119 431.0 316 67.1
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 1.1e-118 430.6 349 63.3
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.4e-118 430.3 268 75.4
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 9.1e-118 427.6 293 71.0
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 1.2e-117 427.2 335 63.6
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 1.6e-117 426.8 310 66.5
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 3.5e-117 425.6 309 67.0
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 1.3e-116 423.7 334 65.0
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 6.5e-116 421.4 248 79.8
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 1.5e-115 420.2 340 63.5
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 7.2e-115 417.9 231 86.6
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 9.4e-115 417.5 308 66.9
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 3.6e-114 415.6 307 66.8
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 1.0e-113 414.1 318 65.1
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 8.8e-113 411.0 255 75.3
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 3.3e-112 409.1 329 62.3
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 5.7e-112 408.3 257 75.9
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.3e-111 407.1 216 87.5
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.0e-108 397.5 327 62.4
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 2.3e-105 386.3 337 61.7
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 7.5e-104 381.3 329 61.4
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 3.1e-102 375.9 293 65.2
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 7.0e-102 374.8 310 59.7
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 1.2e-90 337.4 241 65.1
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 8.0e-90 334.7 312 54.2
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 8.3e-87 324.7 185 83.8
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 8.3e-87 324.7 185 83.8
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 2.3e-84 316.6 322 50.9
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 1.6e-77 293.9 211 67.8
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 2.3e-73 280.0 196 67.9
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 7.8e-69 265.0 223 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 5.2e-65 252.3 189 61.9
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 6.0e-61 238.8 149 75.8
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 2.5e-59 233.4 201 58.7
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 6.2e-42 175.6 167 50.9
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 4.0e-33 146.4 78 85.9
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 2.6e-32 143.7 131 58.0
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 4.9e-31 139.4 135 53.3
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 7.4e-19 99.0 59 78.0
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 7.4e-11 72.4 54 64.8
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 2.8e-10 70.5 228 26.8
MD15G1155500 Malus domestica HOM05D003204 ORTHO05D003566 5.3e-09 66.2 225 27.1
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 1.2e-08 65.1 179 31.3
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 4.5e-08 63.2 168 31.0
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 5.9e-08 62.8 171 29.2
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 7.7e-08 62.4 179 30.2
VMungo1309G2170 Vigna mungo HOM05D003204 ORTHO05D003566 7.7e-08 62.4 168 30.4
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 1.0e-07 62.0 182 29.1
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 1.0e-07 62.0 182 29.1
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 1.3e-07 61.6 167 29.3
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 1.3e-07 61.6 171 29.8
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 1.3e-07 61.6 183 29.5
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 1.3e-07 61.6 171 29.8
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 1.3e-07 61.6 171 29.8
Ah.09g226600 Amaranthus hybridus HOM05D003204 ORTHO05D003566 1.7e-07 61.2 167 28.7
CiPaw.15G173600 Carya illinoinensis HOM05D003204 ORTHO05D003566 1.7e-07 61.2 168 30.4
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 1.7e-07 61.2 168 30.4
Gohir.D07G029900 Gossypium hirsutum HOM05D003204 ORTHO05D003566 1.7e-07 61.2 167 29.3
Gorai.001G031100 Gossypium raimondii HOM05D003204 ORTHO05D003566 1.7e-07 61.2 167 29.3
AL8G34170 Arabidopsis lyrata HOM05D003204 ORTHO05D003566 2.2e-07 60.8 178 29.8
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 2.2e-07 60.8 179 29.6
CAN.G520.7 Capsicum annuum HOM05D003204 ORTHO05D003566 2.2e-07 60.8 168 29.8
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 2.2e-07 60.8 174 28.7
CAN.G551.27 Capsicum annuum HOM05D003204 ORTHO05D003566 2.9e-07 60.5 168 29.8
Thecc.09G034200 Theobroma cacao HOM05D003204 ORTHO05D003566 2.9e-07 60.5 168 30.4
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 3.8e-07 60.1 171 29.2
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 3.8e-07 60.1 171 29.2
FAN26G1065 Fragaria x ananassa HOM05D003204 ORTHO05D003566 3.8e-07 60.1 168 29.8
Gohir.A07G026000 Gossypium hirsutum HOM05D003204 ORTHO05D003566 3.8e-07 60.1 167 29.3
Os02g0612900 Oryza sativa ssp. japonica HOM05D003204 ORTHO05D003566 3.8e-07 60.1 168 29.8
C02p13620 Brassica napus HOM05D003204 ORTHO05D003566 5.0e-07 59.7 180 30.0
FvH4_1g01260 Fragaria vesca HOM05D003204 ORTHO05D003566 5.0e-07 59.7 171 28.7
Lalb_Chr13g0301021 Lupinus albus HOM05D003204 ORTHO05D003566 5.0e-07 59.7 168 29.8
BcaC03g14124 Brassica carinata HOM05D003204 ORTHO05D003566 6.5e-07 59.3 179 29.1
BolC2t07474H Brassica oleracea HOM05D003204 ORTHO05D003566 6.5e-07 59.3 179 29.1
COL.COLO4_18771 Corchorus olitorius HOM05D003204 ORTHO05D003566 8.5e-07 58.9 168 29.8
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 1.1e-06 58.5 167 28.1
RcHm_v2.0_Chr2g0086051 Rosa chinensis HOM05D003204 ORTHO05D003566 1.1e-06 58.5 168 30.4
THA.LOC104811838 Tarenaya hassleriana HOM05D003204 ORTHO05D003566 1.1e-06 58.5 171 28.1
arahy.Tifrunner.gnm1.ann1.U4K9V9 Arachis hypogaea HOM05D003204 ORTHO05D003566 1.4e-06 58.2 168 29.8
BcaB05g22400 Brassica carinata HOM05D003204 ORTHO05D003566 1.9e-06 57.8 178 29.8
BraA02t05870Z Brassica rapa HOM05D003204 ORTHO05D003566 1.9e-06 57.8 183 29.0
CAN.G520.3 Capsicum annuum HOM05D003204 ORTHO05D003566 1.9e-06 57.8 167 28.7
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 1.9e-06 57.8 171 25.7
arahy.Tifrunner.gnm1.ann1.L7UW02 Arachis hypogaea HOM05D003204 ORTHO05D003566 3.2e-06 57.0 172 31.4
Manes.14G141400 Manihot esculenta HOM05D003204 ORTHO05D003566 3.2e-06 57.0 168 28.6
PSO384G3133 Papaver somniferum HOM05D003204 ORTHO05D003566 3.2e-06 57.0 169 28.4
Eucgr.C00370 Eucalyptus grandis HOM05D003204 ORTHO05D003566 5.5e-06 56.2 168 29.8
Eucgr.C00375 Eucalyptus grandis HOM05D003204 ORTHO05D003566 5.5e-06 56.2 171 29.2
arahy.Tifrunner.gnm1.ann1.BQEK3T Arachis hypogaea HOM05D003204 ORTHO05D003566 7.2e-06 55.8 172 31.4
Phvul.009G194100 Phaseolus vulgaris HOM05D003204 ORTHO05D003566 9.4e-06 55.5 167 28.1


User provided reference genes

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