Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 6.9e-136 487.3 240 100.0
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 6.8e-75 284.6 170 77.6
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.2e-73 279.6 170 78.8
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.2e-73 279.6 170 78.8
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 2.9e-73 279.3 169 77.5
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 1.2e-71 273.9 167 76.0
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 3.5e-71 272.3 160 82.5
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 2.3e-70 269.6 181 69.6
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 2.3e-70 269.6 170 78.8
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 3.9e-70 268.9 157 81.5
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 2.5e-69 266.2 155 80.6
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.2e-68 263.8 170 74.1
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 2.1e-68 263.1 157 79.0
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.1e-68 263.1 155 80.0
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 2.1e-68 263.1 156 79.5
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 2.8e-68 262.7 160 78.1
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 2.8e-68 262.7 169 74.6
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 2.8e-68 262.7 154 79.9
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 3.6e-68 262.3 155 79.4
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.6e-68 262.3 155 79.4
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.6e-68 262.3 155 79.4
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 3.6e-68 262.3 160 78.1
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 3.6e-68 262.3 157 80.3
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 3.6e-68 262.3 157 79.0
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 4.7e-68 261.9 233 60.5
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 4.7e-68 261.9 157 78.3
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 6.2e-68 261.5 228 60.5
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 6.2e-68 261.5 156 78.2
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 6.2e-68 261.5 160 76.2
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 6.2e-68 261.5 157 76.4
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 1.1e-67 260.8 233 60.1
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 1.1e-67 260.8 158 77.2
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 1.1e-67 260.8 157 78.3
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 1.1e-67 260.8 156 79.5
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.4e-67 260.4 221 60.2
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 1.4e-67 260.4 160 78.1
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 1.4e-67 260.4 166 72.9
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 1.8e-67 260.0 157 75.8
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 2.3e-67 259.6 233 60.1
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.3e-67 259.6 172 68.6
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 3.1e-67 259.2 157 76.4
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 3.1e-67 259.2 156 78.2
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 4.0e-67 258.8 170 71.8
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 4.0e-67 258.8 158 77.8
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 5.2e-67 258.5 241 58.1
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 5.2e-67 258.5 155 78.7
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 5.2e-67 258.5 156 77.6
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 5.2e-67 258.5 157 77.7
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 6.8e-67 258.1 167 73.7
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 8.9e-67 257.7 160 76.2
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 8.9e-67 257.7 156 77.6
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 8.9e-67 257.7 157 77.7
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.2e-66 257.3 173 73.4
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 1.5e-66 256.9 226 61.1
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 2.0e-66 256.5 156 76.3
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.0e-66 256.5 155 78.1
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 3.4e-66 255.8 157 76.4
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 4.4e-66 255.4 156 76.3
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 7.6e-66 254.6 157 77.1
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 7.6e-66 254.6 173 69.9
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 1.3e-65 253.8 165 72.1
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.3e-65 253.8 153 77.8
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 1.7e-65 253.4 183 70.5
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 2.9e-65 252.7 158 74.1
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 3.8e-65 252.3 156 76.3
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 3.8e-65 252.3 157 74.5
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 6.4e-65 251.5 156 75.6
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 8.4e-65 251.1 180 68.3
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 1.1e-64 250.8 190 66.8
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.1e-64 250.8 173 66.5
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 1.4e-64 250.4 156 75.0
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 1.9e-64 250.0 156 75.6
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 1.9e-64 250.0 156 74.4
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 2.4e-64 249.6 155 76.8
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 2.4e-64 249.6 156 75.6
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 2.4e-64 249.6 157 73.9
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 3.2e-64 249.2 158 72.2
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 3.2e-64 249.2 158 72.2
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.1e-64 248.8 156 76.9
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 4.1e-64 248.8 201 64.2
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.4e-64 248.4 158 75.3
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 5.4e-64 248.4 168 72.0
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 7.1e-64 248.1 160 71.9
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 7.1e-64 248.1 156 75.0
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 9.2e-64 247.7 156 75.0
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 1.2e-63 247.3 172 69.8
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.6e-63 246.9 167 73.7
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 4.6e-63 245.4 153 75.2
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 1.3e-62 243.8 156 72.4
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.9e-61 240.0 148 76.4
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 4.3e-61 238.8 158 72.2
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 7.3e-61 238.0 160 71.9
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 9.6e-61 237.7 147 75.5
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 9.6e-61 237.7 181 65.2
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 4.7e-60 235.3 164 68.9
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 2.4e-59 233.0 154 70.1
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 3.1e-59 232.6 154 70.1
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 6.9e-59 231.5 218 55.0
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 8.9e-59 231.1 154 72.7
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 7.6e-58 228.0 205 58.0
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.1e-56 224.2 147 72.1
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 3.5e-55 219.2 195 57.4
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 7.8e-55 218.0 166 65.1
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 3.3e-53 212.6 133 78.9
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 3.6e-52 209.1 154 63.0
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 4.0e-51 205.7 151 65.6
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 1.7e-49 200.3 123 78.9
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 6.4e-49 198.4 170 59.4
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 1.9e-48 196.8 153 57.5
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 3.5e-47 192.6 120 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 6.9e-43 178.3 141 56.7
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 2.9e-41 172.9 142 63.4
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 1.9e-37 160.2 163 50.3
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.1e-35 152.9 84 81.0
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.3e-33 147.5 135 58.5
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.3e-33 147.5 135 58.5
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 2.4e-27 126.7 74 85.1
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.9e-27 125.2 84 75.0
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.9e-25 119.8 114 47.4
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 1.0e-22 111.3 116 45.7
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 2.5e-21 106.7 119 42.0
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 4.8e-20 102.4 129 40.3
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 8.2e-20 101.7 85 58.8
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 5.1e-14 82.4 82 51.2
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.7e-12 77.4 56 67.9
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 3.7e-12 76.3 46 76.1
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 3.7e-12 76.3 40 80.0
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 1.0e-09 68.2 68 52.9
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 1.4e-08 64.3 42 71.4
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.3e-06 57.0 124 29.8
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.3e-06 57.0 124 29.8


User provided reference genes

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